| Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences B Liu, F Liu, X Wang, J Chen, L Fang, KC Chou Nucleic acids research 43 (W1), W65-W71, 2015 | 750 | 2015 |
| Haplotype-resolved diverse human genomes and integrated analysis of structural variation P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... Science 372 (6537), eabf7117, 2021 | 432 | 2021 |
| Identification of real microRNA precursors with a pseudo structure status composition approach B Liu, L Fang, F Liu, X Wang, J Chen, KC Chou PloS one 10 (3), e0121501, 2015 | 270 | 2015 |
| A comprehensive review and comparison of different computational methods for protein remote homology detection J Chen, M Guo, X Wang, B Liu Briefings in bioinformatics 19 (2), 231-244, 2018 | 148 | 2018 |
| dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation J Chen, R Long, X Wang, B Liu, KC Chou Scientific reports 6 (1), 32333, 2016 | 103 | 2016 |
| Application of learning to rank to protein remote homology detection B Liu, J Chen, X Wang Bioinformatics 31 (21), 3492-3498, 2015 | 97 | 2015 |
| Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis B Liu, J Chen, X Wang Molecular Genetics and Genomics 290, 1919-1931, 2015 | 82 | 2015 |
| miRNA-dis: microRNA precursor identification based on distance structure status pairs B Liu, L Fang, J Chen, F Liu, X Wang Molecular BioSystems 11 (4), 1194-1204, 2015 | 78 | 2015 |
| IMiRNA-SSF: improving the identification of MicroRNA precursors by combining negative sets with different distributions J Chen, X Wang, B Liu Scientific reports 6 (1), 19062, 2016 | 76 | 2016 |
| Protein remote homology detection based on bidirectional long short-term memory S Li, J Chen, B Liu BMC bioinformatics 18, 1-8, 2017 | 71 | 2017 |
| Differential privacy protection against membership inference attack on machine learning for genomic data J Chen, WH Wang, X Shi BIOCOMPUTING 2021: Proceedings of the Pacific Symposium, 26-37, 2020 | 55 | 2020 |
| ProtDec-LTR2. 0: an improved method for protein remote homology detection by combining pseudo protein and supervised Learning to Rank J Chen, M Guo, S Li, B Liu Bioinformatics 33 (21), 3473-3476, 2017 | 41 | 2017 |
| Sparse convolutional denoising autoencoders for genotype imputation J Chen, X Shi Genes 10 (9), 652, 2019 | 34 | 2019 |
| PAR-GAN: improving the generalization of generative adversarial networks against membership inference attacks J Chen, WH Wang, H Gao, X Shi Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data …, 2021 | 30 | 2021 |
| Protein remote homology detection and fold recognition based on Sequence-Order Frequency Matrix B Liu, J Chen, M Guo, X Wang IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (1 …, 2017 | 24 | 2017 |
| Association of CNVs with methylation variation X Shi, S Radhakrishnan, J Wen, JY Chen, J Chen, BA Lam, RE Mills, ... NPJ genomic medicine 5 (1), 41, 2020 | 21 | 2020 |
| Protein remote homology detection based on an ensemble learning approach J Chen, B Liu, D Huang BioMed research international 2016, 2016 | 20 | 2016 |
| Population-scale genomic data augmentation based on conditional generative adversarial networks J Chen, ME Mowlaei, X Shi Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020 | 11 | 2020 |
| CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction Z Wu, M Guo, X Jin, J Chen, B Liu Bioinformatics 39 (3), btad123, 2023 | 10 | 2023 |
| Protein remote homology detection by combining pseudo dimer composition with an ensemble learning method B Liu, J Chen, S Wang Current Proteomics 13 (2), 86-91, 2016 | 10 | 2016 |
Xinghua (Mindy) ShiTemple UniversityVerified email at temple.edu
