| Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing Y Che, Y Xia, L Liu, AD Li, Y Yang, T Zhang Microbiome 7 (1), 1-13, 2019 | 281 | 2019 |
| Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes Y Che, Y Yang, X Xu, K Břinda, MF Polz, WP Hanage, T Zhang Proceedings of the National Academy of Sciences 118 (6), e2008731118, 2021 | 183 | 2021 |
| An assessment of resistome and mobilome in wastewater treatment plants through temporal and spatial metagenomic analysis X Yin, Y Yang, Y Deng, Y Huang, L Li, LYL Chan, T Zhang Water Research 209, 117885, 2022 | 42 | 2022 |
| Charting the complexity of the activated sludge microbiome through a hybrid sequencing strategy L Liu, Y Wang, Y Yang, D Wang, SH Cheng, C Zheng, T Zhang Microbiome 9, 1-15, 2021 | 34 | 2021 |
| Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes L Liu, Y Yang, Y Deng, T Zhang Microbiome 10 (1), 209, 2022 | 33 | 2022 |
| Rapid absolute quantification of pathogens and ARGs by nanopore sequencing Y Yang, Y Che, L Liu, C Wang, X Yin, Y Deng, C Yang, T Zhang Science of the Total Environment 809, 152190, 2022 | 31 | 2022 |
| High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP-and human/animal-associated bacteria Y Che, X Xu, Y Yang, K Břinda, W Hanage, C Yang, T Zhang Microbiome 10 (1), 16, 2022 | 27 | 2022 |
| Acesulfame aerobic biodegradation by enriched consortia and Chelatococcus spp.: Kinetics, transformation products, and genomic characterization Y Huang, Y Deng, JCF Law, Y Yang, J Ding, KSY Leung, T Zhang Water Research 202, 117454, 2021 | 21 | 2021 |
| Underrepresented high diversity of class 1 integrons in the environment uncovered by PacBio sequencing using a new primer Y Yang, AN Zhang, Y Che, L Liu, Y Deng, T Zhang Science of The Total Environment 787, 147611, 2021 | 14 | 2021 |
| Microbiome assembly for sulfonamide subsistence and the transfer of genetic determinants Y Deng, Y Huang, Y Che, Y Yang, X Yin, A Yan, L Dai, YY Liu, M Polz, ... The ISME Journal 15 (10), 2817-2829, 2021 | 12 | 2021 |
| Evaluation of RT-qPCR primer-probe sets to inform public health interventions based on COVID-19 sewage tests X Xu, Y Deng, X Zheng, S Li, J Ding, Y Yang, HY On, R Yang, HK Chui, ... Environmental Science & Technology 56 (12), 8875-8884, 2022 | 11 | 2022 |
| QMRA of beach water by Nanopore sequencing-based viability-metagenomics absolute quantification Y Yang, Y Deng, X Shi, L Liu, X Yin, W Zhao, S Li, C Yang, T Zhang Water Research 235, 119858, 2023 | 8 | 2023 |
| Absolute quantification and genome-centric analyses elucidate the dynamics of microbial populations in anaerobic digesters C Wang, Y Yang, Y Wang, D Wang, X Xu, Y Wang, L Li, C Yang, T Zhang Water Research 224, 119049, 2022 | 7 | 2022 |
| Niche differentiation and symbiotic association among ammonia/nitrite oxidizers in a full-scale rotating biological contactor D Wang, Y Wang, L Liu, Y Chen, C Wang, X Xu, Y Yang, Y Wang, ... Water Research 225, 119137, 2022 | 4 | 2022 |
| Establishing reference material for the quest towards standardization in environmental microbial metagenomic studies Y Yang, Y Deng, L Liu, X Yin, X Xu, D Wang, T Zhang Water Research 245, 120641, 2023 | 1 | 2023 |
| Sucralose biodegradation and enriched degrading consortia revealed by combining Illumina and Nanopore sequencing Y Huang, JCF Law, Y Wang, Y Deng, L Liu, Y Zhang, J Ding, Y Yang, ... Chemical Engineering Journal 461, 141766, 2023 | 1 | 2023 |
| Reply to Partridge et al.: Complementary bioinformatics and experimental approaches to investigate the transfer of AMR genes Y Che, Y Yang, X Xu, K Břinda, MF Polz, WP Hanage, T Zhang Proceedings of the National Academy of Sciences 118 (35), e2108995118, 2021 | 1 | 2021 |
| Standardization in global environmental antibiotic resistance genes (ARGs) surveillance X Mao, X Yin, Y Yang, Y Che, X Xu, Y Deng, L Li, T Zhang Critical Reviews in Environmental Science and Technology, 1-18, 2024 | | 2024 |
| Reply to Shaw: Challenges for enrichment analysis of AMR gene-bearing plasmids Y Che, Y Yang, X Xu, K Břinda, MF Polz, WP Hanage, T Zhang Proceedings of the National Academy of Sciences 118 (21), e2104557118, 2021 | | 2021 |
