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Yuan Zhang
Yuan Zhang
Research faculty of Statistics, Florida State University
Verified email at fsu.edu
Title
Cited by
Cited by
Year
Prodconn-protein design using a convolutional neural network
Y Zhang, Y Chen, C Wang, CC Lo, X Liu, W Wei, J Zhang
Biophysical Journal 118 (3), 43a-44a, 2020
672020
Secondary structure assignment for conformationally irregular peptides: Comparison between DSSP, STRIDE and KAKSI
Y Zhang, C Sagui
Journal of Molecular Graphics and Modelling 55, 72-84, 2015
572015
Structure and dynamics of DNA and RNA double helices obtained from the GGGGCC and CCCCGG hexanucleotide repeats that are the hallmark of C9FTD/ALS diseases
Y Zhang, C Roland, C Sagui
ACS chemical neuroscience 8 (3), 578-591, 2017
382017
Structural and dynamical characterization of DNA and RNA quadruplexes obtained from the GGGGCC and GGGCCT hexanucleotide repeats associated with C9FTD/ALS and SCA36 diseases
Y Zhang, C Roland, C Sagui
ACS chemical neuroscience 9 (5), 1104-1117, 2017
292017
Amyloid properties of asparagine and glutamine in prion-like proteins
Y Zhang, VH Man, C Roland, C Sagui
ACS chemical neuroscience 7 (5), 576-587, 2016
292016
Tuning electronic structure of graphene via tailoring structure: theoretical study
HY He, Y Zhang, BC Pan
Journal of Applied Physics 107 (11), 2010
242010
E-motif formed by extrahelical cytosine bases in DNA homoduplexes of trinucleotide and hexanucleotide repeats
F Pan, Y Zhang, VH Man, C Roland, C Sagui
Nucleic Acids Research 46 (2), 942-955, 2018
202018
Applications of AlphaFold beyond protein structure prediction
Y Zhang, P Li, F Pan, H Liu, P Hong, X Liu, J Zhang
bioRxiv, 2021.11. 03.467194, 2021
152021
Molecular conformations and dynamics of nucleotide repeats associated with neurodegenerative diseases: double helices and CAG hairpin loops
F Pan, Y Zhang, P Xu, VH Man, C Roland, K Weninger, C Sagui
Computational and Structural Biotechnology Journal 19, 2819-2832, 2021
132021
The gp41659–671 HIV-1 Antibody Epitope: A Structurally Challenging Small Peptide
Y Zhang, C Sagui
The Journal of Physical Chemistry B 118 (1), 69-80, 2014
112014
A reinforcement learning approach for protein–ligand binding pose prediction
C Wang, Y Chen, Y Zhang, K Li, M Lin, F Pan, W Wu, J Zhang
BMC bioinformatics 23 (1), 368, 2022
102022
Pre-trained models, data augmentation, and ensemble learning for biomedical information extraction and document classification
A Erdengasileng, Q Han, T Zhao, S Tian, X Sui, K Li, W Wang, J Wang, ...
Database 2022, baac066, 2022
72022
Estimating the designability of protein structures
F Pan, Y Zhang, X Liu, J Zhang
bioRxiv, 2021.11. 03.467111, 2021
42021
FTIP-An Accurate and Efficient Method for Global Protein Surface Comparison
Y Zhang, X Sui, SM Stagg, J Zhang
Biophysical Journal 118 (3), 501a, 2020
32020
Protein loop modeling and refinement using deep learning models
F Pan, Y Zhang, CC Lo, A Mandal, X Liu, J Zhang
bioRxiv, 2021.11. 03.467148, 2021
22021
Structure and stability of amyloid protofibrils of polyglutamine and polyasparagine from molecular dynamics simulations
VH Man, Y Zhang, C Roland, C Sagui
Biomolecular Simulations in Structure-Based Drug Discovery, 2018
12018
BioKG: a comprehensive, high-quality biomedical knowledge graph for AI-powered, data-driven biomedical research
Y Zhang, F Pan, X Sui, K Yu, K Li, S Tian, A Erdengasileng, Q Han, ...
2023
ProDCoNN-server: a web server for protein sequence prediction and design from a three-dimensional structure
Y Zhang, A Mandal, K Cui, X Liu, J Zhang
bioRxiv, 2021.11. 04.467289, 2021
2021
Structural Characterization of Various Peptides and Nucleotides Associated with Neurodegenerative Diseases.
Y Zhang
2016
Contrasting Roles of Asparagine and Glutamine in the Aggregation of Prion-Like Proteins
Y Zhang, VH Man, C Roland, C Sagui
Biophysical Journal 110 (3), 214a-215a, 2016
2016
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Articles 1–20