| Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ... Cell systems 3 (1), 95-98, 2016 | 2457 | 2016 |
| De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds O Dudchenko, SS Batra, AD Omer, SK Nyquist, M Hoeger, NC Durand, ... Science 356 (6333), 92-95, 2017 | 1834 | 2017 |
| Cohesin loss eliminates all loop domains SSP Rao, SC Huang, BG St Hilaire, JM Engreitz, EM Perez, ... Cell 171 (2), 305-320. e24, 2017 | 1736 | 2017 |
| Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom NC Durand, JT Robinson, MS Shamim, I Machol, JP Mesirov, ES Lander, ... Cell systems 3 (1), 99-101, 2016 | 1445 | 2016 |
| The energetics and physiological impact of cohesin extrusion L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ... Cell 173 (5), 1165-1178. e20, 2018 | 555 | 2018 |
| Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture EM Darrow, MH Huntley, O Dudchenko, EK Stamenova, NC Durand, ... Proceedings of the National Academy of Sciences 113 (31), E4504-E4512, 2016 | 292 | 2016 |
| Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development DH Phanstiel, K Van Bortle, DV Spacek, GT Hess, MS Shamim, I Machol, ... Molecular Cell 67 (6), 1037–1048, 2017 | 287 | 2017 |
| The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000 O Dudchenko, MS Shamim, SS Batra, NC Durand, NT Musial, R Mostofa, ... BioRxiv, 254797, 2018 | 254 | 2018 |
| Genetic determinants of co-accessible chromatin regions in activated T cells across humans RE Gate, CS Cheng, AP Aiden, A Siba, M Tabaka, D Lituiev, I Machol, ... Nature genetics 50 (8), 1140-1150, 2018 | 180 | 2018 |
| The fundamental role of chromatin loop extrusion in physiological V (D) J recombination Y Zhang, X Zhang, Z Ba, Z Liang, EW Dring, H Hu, J Lou, N Kyritsis, ... Nature 573 (7775), 600-604, 2019 | 145 | 2019 |
| Large DNA methylation nadirs anchor chromatin loops maintaining hematopoietic stem cell identity X Zhang, M Jeong, X Huang, XQ Wang, X Wang, W Zhou, MS Shamim, ... Molecular cell 78 (3), 506-521. e6, 2020 | 97* | 2020 |
| Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments. Cell Syst 3: 95–98 NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ... | 87 | 2016 |
| CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions A Kaushal, G Mohana, J Dorier, I Özdemir, A Omer, P Cousin, ... Nature communications 12 (1), 1011, 2021 | 80 | 2021 |
| Multiomic profiling identifies cis-regulatory networks underlying human pancreatic β cell identity and function N Lawlor, EJ Marquez, P Orchard, N Narisu, MS Shamim, A Thibodeau, ... Cell reports 26 (3), 788-801. e6, 2019 | 75 | 2019 |
| Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus) PA Larsen, RA Harris, Y Liu, SC Murali, CR Campbell, AD Brown, ... BMC biology 15, 1-17, 2017 | 63 | 2017 |
| Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom. Cell Syst 3: 99–101 NC Durand, JT Robinson, MS Shamim, I Machol, JP Mesirov, ES Lander, ... | 54 | 2016 |
| The ENCODE uniform analysis pipelines BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ... Research Square, 2023 | 44 | 2023 |
| MCPH1 inhibits Condensin II during interphase by regulating its SMC2-Kleisin interface M Houlard, EE Cutts, MS Shamim, J Godwin, D Weisz, AP Aiden, ... Elife 10, e73348, 2021 | 29 | 2021 |
| An encyclopedia of enhancer-gene regulatory interactions in the human genome AR Gschwind, KS Mualim, A Karbalayghareh, MU Sheth, KK Dey, ... bioRxiv, 2023 | 17 | 2023 |
| Cooperation among an anonymous group protected Bitcoin during failures of decentralization A Blackburn, C Huber, Y Eliaz, MS Shamim, D Weisz, G Seshadri, K Kim, ... arXiv preprint arXiv:2206.02871, 2022 | 7 | 2022 |
Erez Lieberman AidenBaylor College of MedicineVerified email at erez.com
