| Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression C Xia, J Fan, G Emanuel, J Hao, X Zhuang Proceedings of the National Academy of Sciences 116 (39), 19490-19499, 2019 | 523 | 2019 |
| Imaging-based pooled CRISPR screening reveals regulators of lncRNA localization C Wang, T Lu, G Emanuel, HP Babcock, X Zhuang Proceedings of the National Academy of Sciences 116 (22), 10842-10851, 2019 | 106 | 2019 |
| High-throughput, image-based screening of pooled genetic-variant libraries G Emanuel, JR Moffitt, X Zhuang Nature methods 14 (12), 1159-1162, 2017 | 66 | 2017 |
| Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing J Liu, V Tran, VNP Vemuri, A Byrne, M Borja, YJ Kim, S Agarwal, R Wang, ... Life Science Alliance 6 (1), 2023 | 40* | 2023 |
| Spatial analysis of human lung cancer reveals organized immune hubs enriched for stem-like CD8 T cells and associated with immunotherapy response JH Chen, LT Nieman, M Spurrell, V Jorgji, P Richieri, KH Xu, R Madhu, ... BioRxiv, 2023.04. 04.535379, 2023 | 15 | 2023 |
| Using MERSCOPE to generate a cell atlas of the mouse brain that includes lowly expressed genes G Emanuel, J He Microscopy Today 29 (6), 16-19, 2021 | 7 | 2021 |
| MERlin-Scalable and extensible MERFISH analysis software, v0. 1.6 G Emanuel, SW Eichhorn, X Zhuang Zenodo, 2020 | 5 | 2020 |
| Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy JH Chen, LT Nieman, M Spurrell, V Jorgji, L Elmelech, P Richieri, KH Xu, ... Nature Immunology 25 (4), 644-658, 2024 | 4 | 2024 |
| A single-cell spatially resolved map of colorectal cancer identifies novel spatial relationships between cancer cells and the microenvironment C Price, JH Chen, K Pelka, S Chao, M Therrien, T Wiggin, N Fernandez, ... Cancer Research 82 (12_Supplement), 2030-2030, 2022 | 2 | 2022 |
| 920 A single-cell spatially resolved MERFISH map of the colorectal tumor immune microenvironment C Price, J Chen, K Pelka, S Chao, J He, G Boland, G Emanuel, ... Journal for ImmunoTherapy of Cancer 9 (Suppl 2), 2021 | 2 | 2021 |
| Systems and methods for high-throughput image-based screening X Zhuang, GA Emanuel, JR Moffitt US Patent 11,788,123, 2023 | 1 | 2023 |
| Spatially resolved single cell transcriptomic profiling in formalin-fixed paraffin-embedded (FFPE) tissues J He, J He, T Wiggin, R Foreman, R Chen, N Fernandez, G Emanuel Cancer Research 83 (7_Supplement), 4195-4195, 2023 | 1 | 2023 |
| High-throughput, image-based screening of genetic variant libraries G Emanuel, JR Moffitt, X Zhuang bioRxiv, 143966, 2017 | 1 | 2017 |
| Systems and methods for high-throughput image-based screening X Zhuang, GA Emanuel, JR Moffitt US Patent App. 18/461,672, 2024 | | 2024 |
| Abstract LB333: Improved spatially resolved single-cell transcriptomic imaging in archival tissues with MERSCOPE J He, B Wang, J He, R Chen, B Patterson, S Tattikota, T Wiggin, ... Cancer Research 84 (7_Supplement), LB333-LB333, 2024 | | 2024 |
| MERFISH Enables Mapping of Cellular Diversity with Spatial Context at Subcellular Resolution G Emanuel, J He Microscopy Today 29 (4), 30-33, 2021 | | 2021 |
| Library construction and imaging for high-throughput image-based screening using multiplexed FISH JR Moffitt, X Zhuang, G Emanuel | | 2017 |
