Marcel H Schulz

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Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Florian SchmidtImmunoScapeVerified email at immunoscape.com
Peter RobinsonBerlin Institute of Health, Charité - Universitätsmedizin, Berlin, GermanyVerified email at bih-charite.de
Sebastian BauerVerified email at sebastianbauer.info
Sebastian KöhlerExpert AI engineer, Ada Health; Member of Monarch InitiativeVerified email at ada.com
Hugues RichardRobert Koch Institute (Researcher) / Sorbonne University (Ass. Prof., on leave)Verified email at upmc.fr
Martin SimonProfessor Molecular Cell BiologyVerified email at uni-wuppertal.de
Markus ListData Science in Systems Biology, School of Life Sciences, Technical University of MunichVerified email at tum.de
Karl JV NordströmAstraZeneca ABVerified email at astrazeneca.com
Ziv Bar-JosephProfessor of Computational Biology and Machine Learning, School of Computer Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Jörn WalterProfessor of Genetics & Epigenetics, Saarland UniveristyVerified email at mx.uni-saarland.de
Dr. Marc SultanRocheVerified email at roche.com
Gilles GasparoniUniversität des SaarlandesVerified email at mx.uni-saarland.de
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn
Sonja M. KesslerInstitute of Pharmacy, Experimental Pharmacology for Natural Sciences, Martin Luther UniversityVerified email at pharmazie.uni-halle.de
David WeeseD4L data4life gGmbHVerified email at data4life.care
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Daniel ZerbinoMosaic TherapeuticsVerified email at mosaic-tx.com
Sivarajan KarunanithiBioinformatician at IMB gGmbHVerified email at imb-mainz.de
Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de

Marcel H Schulz

Professor of Computational Biology, Goethe University Frankfurt, Germany

Verified email at em.uni-frankfurt.de - Homepage

Epigenomics Data Science Gene Regulation Single Cell Analysis Machine Learning Computer Science


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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads K Ye, MH Schulz, Q Long, R Apweiler, Z Ning Bioinformatics 25 (21), 2865-2871, 2009	2316	2009
Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels MH Schulz, DR Zerbino, M Vingron, E Birney Bioinformatics, 2012	1744	2012
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome M Sultan, MH Schulz, H Richard, A Magen, A Klingenhoff, M Scherf, ... Science 321 (5891), 956-960, 2008	1611	2008
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	799	2013
Clinical diagnostics in human genetics with semantic similarity searches in ontologies S Köhler, MH Schulz, P Krawitz, S Bauer, S Dölken, CE Ott, C Mundlos, ... The American Journal of Human Genetics 85 (4), 457-464, 2009	581	2009
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery HG Stunnenberg, M Hirst, International Human Epigenome Consortium Cell 167 (5), 1145-1149, 2016	556	2016
Identification of transcription factor binding sites using ATAC-seq Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa Genome biology 20, 1-21, 2019	464	2019
Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction LS Tombor, D John, SF Glaser, G Luxán, E Forte, M Furtado, N Rosenthal, ... Nature communications 12 (1), 681, 2021	218	2021
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments H Richard, MH Schulz, M Sultan, A Nürnberger, S Schrinner, D Balzereit, ... Nucleic Acids Research 38 (10), e112-e112, 2010	210	2010
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M de Almeida, ... Immunity 45 (5), 1148-1161, 2016	208	2016
Mapping translocation breakpoints by next-generation sequencing W Chen, V Kalscheuer, A Tzschach, C Menzel, R Ullmann, MH Schulz, ... Genome research 18 (7), 1143-1149, 2008	175	2008
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data MH Schulz, WE Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph BMC Systems Biology 6 (1), 104, 2012	152	2012
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction F Schmidt, N Gasparoni, G Gasparoni, K Gianmoena, C Cadenas, ... Nucleic acids research 45 (1), 54-66, 2017	120	2017
Probabilistic error correction for RNA sequencing HS Le, MH Schulz, BM McCauley, VF Hinman, Z Bar-Joseph Nucleic acids research 41 (10), e109-e109, 2013	112	2013
Fiona: a parallel and automatic strategy for read error correction MH Schulz, D Weese, M Holtgrewe, V Dimitrova, S Niu, K Reinert, ... Bioinformatics 30 (17), i356-i363, 2014	97	2014
The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is Essential for Early Mouse Development N Ritter, T Ali, N Kopitchinski, P Schuster, A Beisaw, DA Hendrix, ... Developmental cell 50 (5), 644-657. e8, 2019	86	2019
Analysis of cell type-specific effects of microRNA-92a provides novel insights into target regulation and mechanism of action EM Rogg, WT Abplanalp, C Bischof, D John, MH Schulz, J Krishnan, ... Circulation 138 (22), 2545-2558, 2018	81	2018
Reconstructing dynamic microRNA-regulated interaction networks MH Schulz, KV Pandit, CL Lino Cardenas, N Ambalavanan, N Kaminski, ... Proceedings of the National Academy of Sciences 110 (39), 15686-15691, 2013	79	2013
Bayesian Ontology Querying for Accurate and Noise-Tolerant Semantic Searches S Bauer, S Köhler, MH Schulz, PN Robinson Bioinformatics, 2012	79	2012
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ... Bioinformatics, 2012	79	2012

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