| Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes A Yermanos, A Agrafiotis, R Kuhn, D Robbiani, J Yates, C Papadopoulou, ... NAR genomics and bioinformatics 3 (2), lqab023, 2021 | 29 | 2021 |
| Functional and transcriptomic investigation of laccase activity in the presence of PCB29 identifies two novel enzymes and the multicopper oxidase repertoire of a marine-derived … E Nikolaivits, R Siaperas, A Agrafiotis, J Ouazzani, A Magoulas, Α Gioti, ... Science of the Total Environment 775, 145818, 2021 | 25 | 2021 |
| Phenotypic determinism and stochasticity in antibody repertoires of clonally expanded plasma cells D Neumeier, A Yermanos, A Agrafiotis, L Csepregi, T Chowdhury, ... Proceedings of the National Academy of Sciences 119 (18), e2113766119, 2022 | 20 | 2022 |
| Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity D Shlesinger, KL Hong, G Shammas, N Page, I Sandu, A Agrafiotis, ... Genes & Immunity 23 (6), 183-195, 2022 | 14 | 2022 |
| Unraveling the detoxification mechanism of 2, 4-dichlorophenol by marine-derived mesophotic symbiotic fungi isolated from marine invertebrates E Nikolaivits, A Agrafiotis, A Termentzi, K Machera, G Le Goff, P Álvarez, ... Marine drugs 17 (10), 564, 2019 | 13 | 2019 |
| Clonally expanded virus-specific CD8 T cells acquire diverse transcriptional phenotypes during acute, chronic, and latent infections R Kuhn, I Sandu, A Agrafiotis, KL Hong, D Shlesinger, D Neimeier, ... Frontiers in immunology 13, 782441, 2022 | 11 | 2022 |
| Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis D Neumeier, A Pedrioli, A Genovese, I Sandu, R Ehling, KL Hong, ... European journal of immunology 52 (2), 297-311, 2022 | 11 | 2022 |
| Degradation mechanism of 2, 4-dichlorophenol by fungi isolated from marine invertebrates E Nikolaivits, A Agrafiotis, E Baira, G Le Goff, N Tsafantakis, ... International Journal of Molecular Sciences 21 (9), 3317, 2020 | 11 | 2020 |
| Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS A Agrafiotis, R Dizerens, I Vincenti, I Wagner, R Kuhn, D Shlesinger, ... Acta Neuropathologica 145 (3), 335-355, 2023 | 4 | 2023 |
| DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2 A Yermanos, KL Hong, A Agrafiotis, J Han, S Nadeau, C Valenzuela, ... BMC genomics 23 (1), 289, 2022 | 4 | 2022 |
| Generation of a single-cell B cell atlas of antibody repertoires and transcriptomes to identify signatures associated with antigen specificity A Agrafiotis, D Neumeier, KL Hong, T Chowdhury, R Ehling, R Kuhn, ... Iscience 26 (3), 2023 | 3 | 2023 |
| Echidna: integrated simulations of single-cell immune receptor repertoires and transcriptomes J Han, S Masserey, D Shlesinger, R Kuhn, C Papadopoulou, A Agrafiotis, ... Bioinformatics Advances 2 (1), vbac062, 2022 | 3 | 2022 |
| ePlatypus: an ecosystem for computational analysis of immunogenomics data TS Cotet, A Agrafiotis, V Kreiner, R Kuhn, D Shlesinger, ... Bioinformatics 39 (9), btad553, 2023 | | 2023 |
| Biodegradation of 2, 4, 5-trichlorobiphenyl (PCB29) by marine-derived mesophotic fungi E Nikolaivits, A Agrafiotis, N Fokialakis, E Topakas New Biotechnology 44, S136-S137, 2018 | | 2018 |
| Evaluating predictive patterns of antigen specific B cells by single cell transcriptome and antibody repertoire sequencing L Erlach, R Kuhn, A Agrafiotis, D Shlesinger, A Yermanos, ST Reddy ICLR 2024 Workshop on Generative and Experimental Perspectives for …, 0 | | |
| Exploiting marine fungal biodiversity for the bioremediation of chlorinated aromatic pollutants and discovery of novel enzymes E Nikolaivits, A Agrafiotis, R Siaperas, A Termentzi, N Fokialakis, ... | | |
Alexander YermanosETH Zurich, UMC UtrechtVerified email at ethz.ch
