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J. Harry Caufield
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Year
Global landscape of cell envelope protein complexes in Escherichia coli
M Babu, C Bundalovic-Torma, C Calmettes, S Phanse, Q Zhang, Y Jiang, ...
Nature biotechnology 36 (1), 103-112, 2018
1222018
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes
JT Reese, H Blau, E Casiraghi, T Bergquist, JJ Loomba, TJ Callahan, ...
EBioMedicine 87, 2023
722023
The yeast two-hybrid system: a tool for mapping protein–protein interactions
J Mehla, JH Caufield, P Uetz
Cold Spring Harbor Protocols 2015 (5), pdb. top083345, 2015
602015
A comparison and optimization of yeast two-hybrid systems
JH Caufield, N Sakhawalkar, P Uetz
Methods 58 (4), 317-324, 2012
552012
A comparison of two-hybrid approaches for detecting protein–protein interactions
J Mehla, JH Caufield, N Sakhawalkar, P Uetz
Methods in enzymology 586, 333-358, 2017
452017
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ...
Clinical and translational science 15 (8), 1848-1855, 2022
432022
Clinical temporal relation extraction with probabilistic soft logic regularization and global inference
Y Zhou, Y Yan, R Han, JH Caufield, KW Chang, Y Sun, P Ping, W Wang
Proceedings of the AAAI Conference on Artificial Intelligence 35 (16), 14647 …, 2021
432021
Studying protein complexes by the yeast two-hybrid system
SV Rajagopala, P Sikorski, JH Caufield, A Tovchigrechko, P Uetz
Methods 58 (4), 392-399, 2012
382012
A reference set of curated biomedical data and metadata from clinical case reports
JH Caufield, Y Zhou, AO Garlid, SP Setty, DA Liem, Q Cao, JM Lee, ...
Scientific data 5 (1), 1-18, 2018
332018
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning
JH Caufield, H Hegde, V Emonet, NL Harris, MP Joachimiak, ...
Bioinformatics 40 (3), btae104, 2024
302024
Specific N‐terminal cleavage of ribosomal protein L27 in Staphylococcus aureus and related bacteria
EA Wall, JH Caufield, CE Lyons, KA Manning, T Dokland, GE Christie
Molecular microbiology 95 (2), 258-269, 2015
302015
Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease
DA Liem, S Murali, D Sigdel, Y Shi, X Wang, J Shen, H Choi, JH Caufield, ...
American Journal of Physiology-Heart and Circulatory Physiology 315 (4 …, 2018
282018
Bacterial protein meta-interactomes predict cross-species interactions and protein function
JH Caufield, C Wimble, S Shary, S Wuchty, P Uetz
Bmc Bioinformatics 18, 1-14, 2017
242017
Mapping protein–protein interactions using yeast two-hybrid assays
J Mehla, JH Caufield, P Uetz
Cold Spring Harbor Protocols 2015 (5), pdb. prot086157, 2015
242015
The protein interactome of mycobacteriophage Giles predicts functions for unknown proteins
J Mehla, RM Dedrick, JH Caufield, R Siefring, M Mair, A Johnson, ...
Journal of bacteriology 197 (15), 2508-2516, 2015
222015
Protein complexes in bacteria
JH Caufield, M Abreu, C Wimble, P Uetz
PLoS computational biology 11 (2), e1004107, 2015
222015
Progress toward a universal biomedical data translator
K Fecho, AE Thessen, SE Baranzini, C Bizon, JJ Hadlock, S Huang, ...
Clinical and Translational Science 15 (8), 1838-1847, 2022
182022
Evidenceminer: Textual evidence discovery for life sciences
X Wang, Y Guan, W Liu, A Chauhan, E Jiang, Q Li, D Liem, D Sigdel, ...
Proceedings of the 58th Annual Meeting of the Association for Computational …, 2020
182020
Clinical named entity recognition using contextualized token representations
Y Zhou, C Ju, JH Caufield, K Shih, C Chen, Y Sun, KW Chang, P Ping, ...
arXiv preprint arXiv:2106.12608, 2021
162021
Virus-host protein-protein interactions of mycobacteriophage Giles
J Mehla, RM Dedrick, JH Caufield, J Wagemans, N Sakhawalkar, ...
Scientific Reports 7 (1), 16514, 2017
162017
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