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Neha J Varghese
Neha J Varghese
DOE Joint Genome Institute
Verified email at lbl.gov
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Cited by
Year
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
IMA Chen, K Chu, K Palaniappan, M Pillay, A Ratner, J Huang, ...
Nucleic acids research 47 (D1), D666-D677, 2019
6172019
Microbial species delineation using whole genome sequences
NJ Varghese, S Mukherjee, N Ivanova, KT Konstantinidis, K Mavrommatis, ...
Nucleic acids research 43 (14), 6761-6771, 2015
5672015
IMG 4 version of the integrated microbial genomes comparative analysis system
VM Markowitz, IMA Chen, K Palaniappan, K Chu, E Szeto, M Pillay, ...
Nucleic acids research 42 (D1), D560-D567, 2014
5622014
Protein structure determination using metagenome sequence data
S Ovchinnikov, H Park, N Varghese, PS Huang, GA Pavlopoulos, DE Kim, ...
Science 355 (6322), 294-298, 2017
4432017
IMG/M: integrated genome and metagenome comparative data analysis system
IMA Chen, VM Markowitz, K Chu, K Palaniappan, E Szeto, M Pillay, ...
Nucleic acids research, gkw929, 2016
4222016
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359-367, 2018
3182018
IMG/M 4 version of the integrated metagenome comparative analysis system
VM Markowitz, IMA Chen, K Chu, E Szeto, K Palaniappan, M Pillay, ...
Nucleic acids research 42 (D1), D568-D573, 2014
2912014
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
2612021
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676-683, 2017
2122017
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities
IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ...
Nucleic acids research 49 (D1), D751-D763, 2021
1922021
Genome‐based evolutionary history of Pseudomonas spp
C Hesse, F Schulz, CT Bull, BT Shaffer, Q Yan, N Shapiro, KA Hassan, ...
Environmental Microbiology 20 (6), 2142-2159, 2018
1282018
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
CW Beukes, M Palmer, P Manyaka, WY Chan, JR Avontuur, E van Zyl, ...
Frontiers in microbiology 8, 1154, 2017
792017
Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria
LP Hutt, M Huntemann, A Clum, M Pillay, K Palaniappan, N Varghese, ...
Standards in genomic sciences 12 (1), 1-8, 2017
382017
Absence of genome reduction in diverse, facultative endohyphal bacteria
DA Baltrus, K Dougherty, KR Arendt, M Huntemann, A Clum, M Pillay, ...
Microbial genomics 3 (2), 2017
282017
Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus
IK Jordan, AB Conley, IV Antonov, RA Arthur, ED Cook, GP Cooper, ...
Journal of bacteriology 193 (20), 5879-5880, 2011
272011
Complementary metagenomic approaches improve reconstruction of microbial diversity in a forest soil
LV Alteio, F Schulz, R Seshadri, N Varghese, W Rodriguez-Reillo, E Ryan, ...
Msystems 5 (2), e00768-19, 2020
262020
DOE JGI metagenome workflow
A Clum, M Huntemann, B Bushnell, B Foster, B Foster, S Roux, PP Hajek, ...
Msystems 6 (3), e00804-20, 2021
232021
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
B Nowinski, CB Smith, CM Thomas, K Esson, R Marin, CM Preston, ...
Scientific data 6 (1), 1-7, 2019
232019
Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain …
KM Scott, J Williams, CMB Porter, S Russel, TL Harmer, JH Paul, ...
Environmental microbiology 20 (8), 2686-2708, 2018
232018
Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil
MC Rice, JM Norton, F Valois, A Bollmann, PJ Bottomley, MG Klotz, ...
Standards in genomic sciences 11 (1), 1-8, 2016
232016
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