Kinetic Modeling of Metabolism: Present and Future MM Islam, WL Schroeder, R Saha Current Opinion in Systems Biology, 2021 | 21 | 2021 |
OptFill: a tool for infeasible cycle-free gapfilling of stoichiometric metabolic models WL Schroeder, R Saha IScience 23 (1), 2020 | 18 | 2020 |
Introducing an optimization-and explicit Runge-Kutta-based approach to perform dynamic flux balance analysis WL Schroeder, R Saha Scientific reports 10 (1), 9241, 2020 | 16 | 2020 |
Dissecting the metabolic reprogramming of maize root under nitrogen-deficient stress conditions NB Chowdhury, WL Schroeder, D Sarkar, N Amiour, I Quilleré, B Hirel, ... Journal of Experimental Botany 73 (1), 275-291, 2022 | 14 | 2022 |
Computation-driven analysis of model polyextremo-tolerant fungus exophiala dermatitidis: defensive pigment metabolic costs and human applications WL Schroeder, SD Harris, R Saha IScience 23 (4), 2020 | 7 | 2020 |
A detailed genome-scale metabolic model of Clostridium thermocellum investigates sources of pyrophosphate for driving glycolysis WL Schroeder, T Kuil, AJA van Maris, DG Olson, LR Lynd, CD Maranas Metabolic Engineering 77, 306-322, 2023 | 3 | 2023 |
Protocol for Genome-Scale Reconstruction and Melanogenesis Analysis of Exophiala dermatitidis WL Schroeder, R Saha STAR protocols 1 (2), 100105, 2020 | 3 | 2020 |
A Computational Framework to Study the Primary Lifecycle Metabolism of Arabidopsis thaliana WL Schroeder, R Saha bioRxiv, 761189, 2019 | 3 | 2019 |
Optimization-Based Eukaryotic Genetic Circuit Design (EuGeneCiD) and Modeling (EuGeneCiM) Tools: Computational Approach to Synthetic Biology WL Schroeder, AS Baber, R Saha iScience, 2021 | 2 | 2021 |
KOPTIC: A novel approach for in silico prediction of enzyme kinetics and regulation WL Schroeder, R Saha bioRxiv, 807628, 2019 | 2 | 2019 |
Modeling Cocultures of Clostridium Thermocellum and Thermoanaerobacterium Saccharolyticum for Lignocellulosic Ethanol Production W Schroeder, D Olson, LR Lynd, CD Maranas 2023 AIChE Annual Meeting, 2023 | | 2023 |
Systems and Quantitative Biology: Microbial Communities W Schroeder, X Gao 2023 AIChE Annual Meeting, 2023 | | 2023 |
Systems and Quantitative Biology: Modeling Traits, Regulation, and Interactions R Chowdhury, W Schroeder 2023 AIChE Annual Meeting, 2023 | | 2023 |
Developing Computational Tools for in silico elucidation of Cancer Mechanisms, Microenvironment, and Drug Repositioning Candidates W Schroeder 2023 AIChE Annual Meeting, 2023 | | 2023 |
Tracking Pyrophosphate Metabolism and Evaluating Its Significance in the Bioprocessing of Lignocellulosic Biomass By Clostridium Thermocellum W Schroeder, T Kuil, D Olson, CD Maranas 2022 AIChE Annual Meeting, 2022 | | 2022 |
Building Bottom-up Kinetic Models for Optimizing Cell-Free Lignocellulose Degradation Systems W Schroeder, D Olson, CD Maranas 2022 AIChE Annual Meeting, 2022 | | 2022 |
Advances in Computational Methods and Numerical Analysis-I J Paulson, M Stuber, W Schroeder 2022 AIChE Annual Meeting, 2022 | | 2022 |
Bioengineering Y Kwon, W Schroeder, J Boock, N Sandoval 2022 AIChE Annual Meeting, 2022 | | 2022 |
Using EuGeneCiD and EuGeneCiM computational tools for synthetic biology WL Schroeder, AS Baber, R Saha STAR Protocols 2 (4), 100820, 2021 | | 2021 |
Integrated Computational and Experimental Study to Dissect the Stress Response of Maize Root N Chowdhury, W Schroeder, D Zhang, MN Simons, B Hirel, E Cahoon, ... 2021 AIChE Annual Meeting, 2021 | | 2021 |