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Alida Palmisano
Alida Palmisano
Bioinformatics Engineer at National Cancer Institute (NIH/NCI)
Verified email at nih.gov - Homepage
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Cited by
Cited by
Year
The critical size is set at a single-cell level by growth rate to attain homeostasis and adaptation
F Ferrezuelo, N Colomina, A Palmisano, E Gari, C Gallego, ...
Nature communications 3, 1012, 2012
2032012
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular Systems Biology 16 (8), e9110, 2020
1962020
The NCI Transcriptional Pharmacodynamics Workbench: a tool to examine dynamic expression profiling of therapeutic response in the NCI-60 cell line panel
A Monks, Y Zhao, C Hose, H Hamed, J Krushkal, J Fang, D Sonkin, ...
Cancer Research, canres. 0989.2018, 2018
542018
Calibration of dynamic models of biological systems with KInfer
P Lecca, A Palmisano, A Ihekwaba, C Priami
European Biophysics Journal 39 (6), 1019-1039, 2010
302010
Molecular Profiling-Based Assignment of Cancer Therapy (NCI-MPACT): A Randomized Multicenter Phase II Trial
AP Chen, S Kummar, N Moore, LV Rubinstein, Y Zhao, PM Williams, ...
JCO Precision Oncology 5, 133-144, 2021
262021
GeneMed: an informatics hub for the coordination of next-generation sequencing studies that support precision oncology clinical trials
Y Zhao, EC Polley, MC Li, CJ Lih, A Palmisano, DJ Sims, LV Rubinstein, ...
Cancer informatics 14, CIN. S17282, 2015
242015
A new probabilistic generative model of parameter inference in biochemical networks
P Lecca, A Palmisano, C Priami, G Sanguinetti
Proceedings of the 2009 ACM symposium on Applied Computing, 758-765, 2009
222009
Studying irreversible transitions in a model of cell cycle regulation
P Ballarini, T Mazza, A Palmisano, A Csikasz-Nagy
Electronic Notes in Theoretical Computer Science 232, 39-53, 2009
192009
Molecular genomic features associated with in vitro response of the NCI‐60 cancer cell line panel to natural products
J Krushkal, S Negi, LM Yee, JR Evans, T Grkovic, A Palmisano, J Fang, ...
Molecular oncology 15 (2), 381-406, 2021
172021
Association of expression of epigenetic molecular factors with DNA methylation and sensitivity to chemotherapeutic agents in cancer cell lines
S Vural, A Palmisano, WC Reinhold, Y Pommier, BA Teicher, J Krushkal
Clinical Epigenetics 13 (1), 1-23, 2021
162021
Molecular Network Dynamics of Cell Cycle Control: Transitions to Start and Finish
A Csikász-Nagy, A Palmisano, J Zámborszky
Cell Cycle Synchronization, 277-291, 2011
162011
Programming biology in BlenX
L Dematté, R Larcher, A Palmisano, C Priami, A Romanel
Systems Biology for Signaling Networks, 777-820, 2010
152010
From Odes to Language-based, executable models of Biological Systems
A Palmisano, I Mura, C Priami
Pacific Symposium on Biocomputing 14 (12), 239-250, 2009
152009
Molecular Network Dynamics of Cell Cycle Control: Periodicity of Start and Finish
A Palmisano, J Zámborszky, C Oguz, A Csikász-Nagy
Cell Cycle Synchronization: Methods and Protocols, 331-349, 2017
132017
A Stochastic Model Correctly Predicts Changes in Budding Yeast Cell Cycle Dynamics upon Periodic Expression of CLN2
C Oguz, A Palmisano, T Laomettachit, LT Watson, WT Baumann, JJ Tyson
PloS one 9 (5), e96726, 2014
132014
A Stochastic Model Correctly Predicts Changes in Budding Yeast Cell Cycle
C Oguz, A Palmisano, T Laomettachit, LT Watson, WT Baumann
13*2014
MutSpliceDB: A database of splice sites variants with RNA‐seq based evidence on effects on splicing
A Palmisano, S Vural, Y Zhao, D Sonkin
Human Mutation 42 (4), 342-345, 2021
112021
Multistate Model Builder (MSMB): a flexible editor for compact biochemical models
A Palmisano, S Hoops, LT Watson, TC Jones Jr, JJ Tyson, CA Shaffer
BMC systems biology 8 (1), 1-13, 2014
102014
OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trials
A Palmisano, Y Zhao, MC Li, EC Polley, RM Simon
Briefings in Bioinformatics, bbw059, 2016
92016
Feasibility of molecular profiling based assignment of cancer treatment (MPACT): A randomized NCI precision medicine study.
AP Chen, M Williams, S Kummar, CJ Lih, V Datta, E Polley, Y Zhao, ...
Journal of Clinical Oncology 34 (15_suppl), 2539-2539, 2016
82016
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