| Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes C Chong, M Müller, HS Pak, D Harnett, F Huber, D Grun, M Leleu, ... Nature communications 11 (1), 1293, 2020 | 268 | 2020 |
| The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription O Mikhaylichenko, V Bondarenko, D Harnett, IE Schor, M Males, ... Genes & development 32 (1), 42-57, 2018 | 256 | 2018 |
| Promoter shape varies across populations and affects promoter evolution and expression noise IE Schor, JF Degner, D Harnett, E Cannavò, FP Casale, H Shim, ... Nature genetics 49 (4), 550-558, 2017 | 75 | 2017 |
| Genetic variants regulating expression levels and isoform diversity during embryogenesis E Cannavò, N Koelling, D Harnett, D Garfield, FP Casale, L Ciglar, ... Nature 541 (7637), 402-406, 2017 | 65 | 2017 |
| Deconstruction of the beaten Path-Sidestep interaction network provides insights into neuromuscular system development H Li, A Watson, A Olechwier, M Anaya, SK Sorooshyari, DP Harnett, ... Elife 6, e28111, 2017 | 48 | 2017 |
| Protein synthesis in the developing neocortex at near-atomic resolution reveals Ebp1-mediated neuronal proteostasis at the 60S tunnel exit ML Kraushar, F Krupp, D Harnett, P Turko, MC Ambrozkiewicz, T Sprink, ... Molecular cell 81 (2), 304-322. e16, 2021 | 38 | 2021 |
| Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes AR Ringel, Q Szabo, AM Chiariello, K Chudzik, R Schöpflin, P Rothe, ... Cell 185 (20), 3689-3704. e21, 2022 | 37 | 2022 |
| A critical period of translational control during brain development at codon resolution D Harnett, MC Ambrozkiewicz, U Zinnall, A Rusanova, E Borisova, ... Nature Structural & Molecular Biology 29 (12), 1277-1290, 2022 | 32 | 2022 |
| Ribo-seQC: comprehensive analysis of cytoplasmic and organellar ribosome profiling data L Calviello, D Sydow, D Harnett, U Ohler BioRxiv, 601468, 2019 | 29 | 2019 |
| An exploratory investigation of brain collateral circulation plasticity after cerebral ischemia in two experimental C57BL/6 mouse models M Foddis, K Winek, K Bentele, S Mueller, S Blumenau, N Reichhart N, ... Journal of Cerebral Blood Flow & Metabolism 40 (2), 276-287, 2020 | 16 | 2020 |
| Molecular evolution, neurodevelopmental roles and clinical significance of HECT-type UBE3 E3 ubiquitin ligases MC Ambrozkiewicz, KJ Cuthill, D Harnett, H Kawabe, V Tarabykin Cells 9 (11), 2455, 2020 | 14 | 2020 |
| .(2020) Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes C Chong, M Müller, H Pak, D Harnett, F Huber, D Grun, M Leleu, A Auger, ... Nat. Commun 11, 1293, 0 | 11 | |
| Ribo-seQC: comprehensive analysis of cytoplasmic and organellar ribosome profiling data. bioRxiv: 601468 L Calviello, D Sydow, D Harnett, U Ohler | 10 | 2019 |
| Integrated proteogenomic deep sequencing and analytics accurately identify noncanonical peptides in tumor immunopeptidomes. Nat Commun. 2020; 11 (1): 1293 C Chong, M Müller, HS Pak, D Harnett, F Huber, D Grun, M Leleu, ... S41467-020-14968-9, 0 | 6 | |
| Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs AR Ringel, Q Szabo, AM Chiariello, K Chudzik, R Schöpflin, P Rothe, ... BioRxiv, 2021.10. 08.463672, 2021 | 5 | 2021 |
| Genome-wide analysis of actively translated open reading frames using RiboTaper/ORFquant D Harnett, E Meerdink, L Calviello, D Sydow, U Ohler Ribosome Profiling: Methods and Protocols, 331-346, 2021 | 3 | 2021 |
| The architecture of protein synthesis in the developing neocortex at near-atomic resolution reveals Ebp1-mediated neuronal proteostasis at the 60S tunnel exit ML Kraushar, F Krupp, P Turko, MC Ambrozkiewicz, T Sprink, K Imami, ... bioRxiv, 2020.02. 08.939488, 2020 | 1 | 2020 |
| Assessing the relationship between enhancer transcription and activity during embryonic development. V Bondarenko, O Mikhaylichenko, D Harnett, I Schor, E Furlong Biopolymers & Cell 32 (5), 2016 | | 2016 |
| Organizing a PhD symposium—an inside view: Setting up a scientific meeting is challenging—a PhD symposium offers its own unique opportunities and pitfalls MS Schröder, D Harnett, BA Minke, PS Nair, ... EMBO reports 14 (10), 856-860, 2013 | | 2013 |
