| Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19 CGK Ziegler, VN Miao, AH Owings, AW Navia, Y Tang, JD Bromley, ... Cell 184 (18), 4713-4733. e22, 2021 | 257 | 2021 |
| Optofluidic real-time cell sorter for longitudinal CTC studies in mouse models of cancer B Hamza, SR Ng, SM Prakadan, FF Delgado, CR Chin, EM King, LF Yang, ... Proceedings of the National Academy of Sciences 116 (6), 2232-2236, 2019 | 60 | 2019 |
| Linking single-cell measurements of mass, growth rate, and gene expression RJ Kimmerling, SM Prakadan, AJ Gupta, NL Calistri, MM Stevens, ... Genome biology 19 (1), 1-13, 2018 | 49 | 2018 |
| Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage MH Askenase, BA Goods, HE Beatty, AF Steinschneider, SE Velazquez, ... Science Immunology 6 (56), 2021 | 31 | 2021 |
| Cellular and transcriptional diversity over the course of human lactation SK Nyquist, P Gao, TKJ Haining, MR Retchin, RS Drake, K Kolb, BE Mead, ... | 23 | 2021 |
| Single-cell RNA sequencing of liver fine-needle aspirates captures immune diversity in the blood and liver in chronic hepatitis B patients. AS Genshaft, S Subudhi, A Keo, SV JD, N Conceição-Neto, D Mahamed, ... Hepatology (Baltimore, Md.), 2023 | 16 | 2023 |
| Single-cell transcriptomics of staged oocytes and somatic cells reveal novel regulators of follicle activation YY Chen, DD Russo, RS Drake, FE Duncan, AK Shalek, BA Goods, ... Reproduction (Cambridge, England) 164 (2), 55, 2022 | 15 | 2022 |
| Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu BA Goods, MH Askenase, E Markarian, HE Beatty, RS Drake, I Fleming, ... JCI insight 6 (6), 2021 | 12 | 2021 |
| Loss of DNA methyltransferase activity in primed human ES cells triggers increased cell-cell variability and transcriptional repression AM Tsankov, MH Wadsworth, V Akopian, J Charlton, SJ Allon, ... Development 146 (19), dev174722, 2019 | 11 | 2019 |
| Clinical implementation of single-cell RNA sequencing using liver fine needle aspirate tissue sampling and centralized processing captures compartment specific immuno-diversity AS Genshaft, S Subudhi, A Keo, JDS Vasquez, N Conceição-Neto, ... bioRxiv, 2021 | 9 | 2021 |
| Vitrification preserves murine ovarian follicular cell transcriptome in a 3D encapsulated in vitro follicle growth system Y Wang, RS Drake, DD Russo, P Pattarawat, Q Zhang, MB Zelinski, ... Biology of Reproduction 105 (6), 1378-1380, 2021 | 9 | 2021 |
| Profiling Transcriptional Heterogeneity with Seq-Well S3: A Low-Cost, Portable, High-Fidelity Platform for Massively Parallel Single-Cell RNA-Seq RS Drake, MA Villanueva, M Vilme, DD Russo, A Navia, JC Love, ... Single Cell Transcriptomics: Methods and Protocols, 57-104, 2022 | 4 | 2022 |
| Severe COVID-19 is associated with fungal colonization of the nasopharynx and potent induction of IL-17 responses in the nasal epithelium CGK Ziegler, AH Owings, VN Miao, AW Navia, Y Tang, JD Bromley, ... medRxiv, 2022.10. 25.22281528, 2022 | 2 | 2022 |
| scRNA-Seq reveals elevated interferon responses and TNF-α signaling via NFkB in monocytes in children with clinical malaria CM Morang'a, RS Drake, VN Miao, NK Nyakoe, DSY Amuzu, V Appiah, ... medRxiv, 2023.06. 02.23290878, 2023 | 1* | 2023 |
| Molecular and cellular mechanisms that drive the development of a novel long lived stem-like T cell subset AKSRPS Ashish Arunkumar Sharma, Aarthi Talla, Riley Drake, Joumana Zeidan ... Keystone Symposium, T cell memory, 2020 | | 2020 |
| Mapping the Intrahepatic Environment to Peripheral Blood across Stages of Chronic HBV with single-cell RNA-seq A Genshaft, D Mahamed, L Boeijen, N Alatrakchi, N Neto, I Fleming, ... International HBV Meeting, 2019 | | 2019 |
| "Bottom-Up" Profiling of Immune Systems B Goods, J Ordovas-Montañes, P Winter, S Allon, A Genshaft, A Gaillard, ... Beckman Annual Research Symposium, 2018 | | 2018 |
| Single-Cell Genomic Approaches to Define Differentiation and Disease in Gut AKS Jose Ordovas-Montanes, Travis K. Hughes, Marc H. Wadsworth, Sanjay M ... MIT Center for Microbiome Informatics and Therapeutics, 2016 | | 2016 |
| Micro-& Nanoscale Tools for ‘Bottom-Up’ Profiling of Interacting Cellular Systems AKS Alex S Genshaft, Shaina Carroll, Riley S. Drake, Aleth Gaillard,Travis K ... Centers of Excellence in Genomic Science, Stanford, 2016 | | 2016 |
| 'Bottom-Up’ Profiling of Interacting Cellular Systems AKS Alex S Genshaft, Kellie E. Kolb, Riley Drake, Aleth Gaillard, Travis K ... High-Risk, High-Reward Research Symposium, National Institute of Health, 2015 | | 2015 |
