| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 246 | 2019 |
| Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles JT Morton, DM Jin, RH Mills, Y Shao, G Rahman, D McDonald, Q Zhu, ... Nature neuroscience 26 (7), 1208-1217, 2023 | 42 | 2023 |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ... Microbiome 9 (1), 132, 2021 | 38 | 2021 |
| Greengenes2 unifies microbial data in a single reference tree D McDonald, Y Jiang, M Balaban, K Cantrell, Q Zhu, A Gonzalez, ... Nature biotechnology, 1-4, 2023 | 37 | 2023 |
| EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets K Cantrell, MW Fedarko, G Rahman, D McDonald, Y Yang, T Zaw, ... MSystems 6 (2), 10.1128/msystems. 01216-20, 2021 | 36 | 2021 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nat Commun 10: 5477 Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... | 19 | 2019 |
| Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes G Armstrong, K Cantrell, S Huang, D McDonald, N Haiminen, AP Carrieri, ... Genome research 31 (11), 2131-2137, 2021 | 17 | 2021 |
| Greengenes2 enables a shared data universe for microbiome studies D McDonald, Y Jiang, M Balaban, K Cantrell, Q Zhu, A Gonzalez, ... bioRxiv, 2022.12. 19.520774, 2022 | 16 | 2022 |
| Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ... medRxiv, 2020 | 12 | 2020 |
| Learning brain dynamics with coupled low-dimensional nonlinear oscillators and deep recurrent networks G Abrevaya, G Dumas, AY Aravkin, P Zheng, JC Gagnon-Audet, ... Neural Computation 33 (8), 2087-2127, 2021 | 7 | 2021 |
| Compositionally aware phylogenetic beta-diversity measures better resolve microbiomes associated with phenotype C Martino, D McDonald, K Cantrell, AH Dilmore, Y Vázquez-Baeza, ... Msystems 7 (3), e00050-22, 2022 | 5 | 2022 |
| WoL: reference phylogeny for microbes (data pre-release) Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... All rights reserved. No reuse allowed without permission, 2019 | 5 | 2019 |
| Effects of variation in urine sample storage conditions on 16S urogenital microbiome analyses T Kumar, MK Bryant, K Cantrell, SJ Song, D McDonald, HM Tubb, ... Msystems 8 (1), e01029-22, 2023 | 2 | 2023 |
| Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting J Keehner, SR Abeles, CA Longhurst, LE Horton, FE Myers, ... | 1 | 2024 |
| A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables ZM Burcham, AD Belk, BB McGivern, A Bouslimani, P Ghadermazi, ... Nature Microbiology, 1-19, 2024 | | 2024 |
| Effects of variation in sample storage conditions and swab order on 16S vaginal microbiome analyses T Kumar, MK Bryant, K Cantrell, SJ Song, D McDonald, HM Tubb, ... Microbiology Spectrum 12 (1), e03712-23, 2024 | | 2024 |
| Representing Diet in a Tree-Based Format for Interactive and Exploratory Assessment of Dietary Intake Data N Litwin, K Cantrell, A Cotillard, M Derrien, A Johnson, R Knight, ... Current Developments in Nutrition 6, 774, 2022 | | 2022 |
| Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations RA Salido, C Martino, S Karthikeyan, S Huang, G Rahman, A Gonzalez, ... bioRxiv, 2022.02. 23.481658, 2022 | | 2022 |
| Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations (preprint) RA Salido, C Martino, S Karthikeyan, S Huang, G Rahman, A Gonzalez, ... | | 2022 |
| Associations between SARS-CoV-2 and bacteria in the hospital environment C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ... | | 2021 |
