Michael Nute
Title
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Cited by
Year
A comparative study of SVDquartets and other coalescent-based species tree estimation methods
J Chou, A Gupta, S Yaduvanshi, R Davidson, M Nute, S Mirarab, ...
BMC genomics 16 (10), 1-11, 2015
1162015
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ...
The ISME journal 13 (3), 576-587, 2019
1152019
Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows
N Shah, MG Nute, T Warnow, M Pop
Bioinformatics 35 (9), 1613-1614, 2019
462019
Long-branch attraction in species tree estimation: inconsistency of partitioned likelihood and topology-based summary methods
S Roch, M Nute, T Warnow
Systematic biology 68 (2), 281-297, 2019
432019
The Performance of Coalescent-Based Species Tree Estimation Methods under Models of Missing Data
M Nute, J Chou, EK Molloy, T Warnow
BMC Genomics 19 (5), 41-57, 2018
412018
HIPPI: highly accurate protein family classification with ensembles of HMMs
N Nguyen, M Nute, S Mirarab, T Warnow
BMC genomics 17 (10), 89-100, 2016
152016
Evaluating statistical multiple sequence alignment in comparison to other alignment methods on protein data sets
M Nute, E Saleh, T Warnow
Systematic biology 68 (3), 396-411, 2019
142019
Scaling statistical multiple sequence alignment to large datasets
M Nute, T Warnow
BMC genomics 17 (10), 135-144, 2016
132016
NJst and ASTRID are not statistically consistent under a random model of missing data
JA Rhodes, MG Nute, T Warnow
arXiv preprint arXiv:2001.07844, 2020
42020
Statistical consistency of coalescent-based species tree methods under models of missing data
M Nute, J Chou
RECOMB International Workshop on Comparative Genomics, 277-297, 2017
22017
Correction to: The performance of coalescent-based species tree estimation methods under models of missing data
M Nute, J Chou, EK Molloy, T Warnow
BMC genomics 21 (1), 1-2, 2020
12020
Benchmarking statistical multiple sequence alignment
M Nute, E Saleh, T Warnow
bioRxiv, 304659, 2018
12018
Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets
B Kille, Y Liu, N Sapoval, M Nute, L Rauchwerger, N Amato, TJ Treangen
arXiv preprint arXiv:2105.03062, 2021
2021
Alterations to the gut microbiome after sport-related concussion and subconcussive impacts in a collegiate football players cohort.
S Soriano, K Curry, S Sadrameli, Q Wang, M Nute, E Reeves, R Kabir, ...
medRxiv, 2021
2021
KOMB: Graph-Based Characterization of Genome Dynamics in Microbial Communities
A Balaji, N Sapoval, C Seto, RAL Elworth, MG Nute, T Savidge, S Segarra, ...
bioRxiv, 2020.05. 21.109587, 2021
2021
Emu: Species-Level Microbial Community Profiling for Full-Length Nanopore 16S Reads
KD Curry, Q Wang, MG Nute, A Tyshaieva, E Reeves, S Soriano, ...
bioRxiv, 2021
2021
The performance of coalescent-based species tree estimation methods under models of missing data (vol 19, 286, 2018)
M Nute, J Chou, EK Molloy, T Warnow
BMC GENOMICS 21 (1), 2020
2020
Statistical estimation problems in phylogenomics and applications in microbial ecology
MG Nute
University of Illinois at Urbana-Champaign, 2019
2019
HIPPI Supplement
N Nguyen, M Nute, S Mirarab, T Warnow
2016
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Articles 1–19