| Androgen signaling regulates SARS-CoV-2 receptor levels and is associated with severe COVID-19 symptoms in men RM Samuel, H Majd, MN Richter, Z Ghazizadeh, SM Zekavat, A Navickas, ... Cell Stem Cell 27 (6), 876-889. e12, 2020 | 230 | 2020 |
| Performance characteristics of a rapid severe acute respiratory syndrome coronavirus 2 antigen detection assay at a public plaza testing site in San Francisco G Pilarowski, P Lebel, S Sunshine, J Liu, E Crawford, C Marquez, L Rubio, ... The Journal of Infectious Diseases 223 (7), 1139-1144, 2021 | 183* | 2021 |
| Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms E Song, CM Bartley, RD Chow, TT Ngo, R Jiang, CR Zamecnik, ... Cell Reports Medicine 2 (5), 100288, 2021 | 152 | 2021 |
| HIV integration site analysis of cellular models of HIV latency with a probe-enriched next-generation sequencing assay S Sunshine, R Kirchner, SS Amr, L Mansur, R Shakhbatyan, M Kim, ... Journal of virology 90 (9), 4511-4519, 2016 | 63 | 2016 |
| SARS-CoV-2 variant exposures elicit antibody responses with differential cross-neutralization of established and emerging strains including Delta and Omicron MT Laurie, J Liu, S Sunshine, J Peng, D Black, AM Mitchell, SA Mann, ... The Journal of infectious diseases 225 (11), 1909-1914, 2022 | 51 | 2022 |
| Identification of novel, clinically correlated autoantigens in the monogenic autoimmune syndrome APS1 by proteome-wide PhIP-Seq SE Vazquez, EMN Ferré, DW Scheel, S Sunshine, B Miao, ... Elife 9, e55053, 2020 | 48 | 2020 |
| Estimation of secondary household attack rates for emergent spike L452R SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco. J Peng, J Liu, SA Mann, AM Mitchell, MT Laurie, S Sunshine, G Pilarowski, ... Clin. infect. dis, 2021 | 42* | 2021 |
| Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19 A Tsitsiklis, B Zha, A Byrne, C DeVoe, S Levan, E Rackaityte, S Sunshine, ... Research Square, rs. 3. rs-380803, 2021 | 29 | 2021 |
| Rapid deployment of SARS-CoV-2 testing: The CLIAHUB ED Crawford, I Acosta, V Ahyong, EC Anderson, S Arevalo, D Asarnow, ... PLoS pathogens 16 (10), e1008966, 2020 | 22 | 2020 |
| Persistence of ambigrammatic narnaviruses requires translation of the reverse open reading frame H Retallack, KD Popova, MT Laurie, S Sunshine, JL DeRisi Journal of virology 95 (13), 10.1128/jvi. 00109-21, 2021 | 21 | 2021 |
| The pulmonary metatranscriptome prior to pediatric HCT identifies post-HCT lung injury MS Zinter, CA Lindemans, BA Versluys, MY Mayday, S Sunshine, ... Blood, The Journal of the American Society of Hematology 137 (12), 1679-1689, 2021 | 21 | 2021 |
| Peripheral blood lymphocyte HIV DNA levels correlate with HIV associated neurocognitive disorders in Nigeria J Jumare, S Sunshine, H Ahmed, SS El-Kamary, L Magder, L Hungerford, ... Journal of neurovirology 23, 474-482, 2017 | 19 | 2017 |
| Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance … J Peng, J Liu, SA Mann, AM Mitchell, MT Laurie, S Sunshine, G Pilarowski, ... Clinical Infectious Diseases 74 (1), 32-39, 2022 | 16 | 2022 |
| Genome-wide knockout screen identifies human sialomucin CD164 as an essential entry factor for lymphocytic choriomeningitis virus J Liu, KA Knopp, E Rackaityte, CY Wang, MT Laurie, S Sunshine, ... Mbio 13 (3), e00205-22, 2022 | 10 | 2022 |
| Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq S Sunshine, AS Puschnik, JM Replogle, MT Laurie, J Liu, BS Zha, ... Nature Communications 14 (1), 6245, 2023 | 8 | 2023 |
| Pulmonary microbiome and gene expression signatures differentiate lung function in pediatric hematopoietic cell transplant candidates MS Zinter, AB Versluys, CA Lindemans, MY Mayday, G Reyes, ... Science translational medicine 14 (635), eabm8646, 2022 | 7 | 2022 |
| Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transmission Dynamics and Immune Responses in a Household of Vaccinated Persons J Liu, MT Laurie, L Rubio, SE Vazquez, S Sunshine, AM Mitchell, ... Clinical Infectious Diseases 75 (1), e303-e306, 2022 | 5 | 2022 |
| Validation of a murine proteome-wide phage display library for the identification of autoantibody specificities E Rackaityte, I Proekt, HS Miller, A Ramesh, JF Brooks, AF Kung, ... bioRxiv, 2023.04. 07.535899, 2023 | 4 | 2023 |
