| clusterProfiler: an R package for comparing biological themes among gene clusters G Yu, LG Wang, Y Han, QY He Omics: a journal of integrative biology 16 (5), 284-287, 2012 | 25438 | 2012 |
| clusterProfiler 4.0: A universal enrichment tool for interpreting omics data T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, L Zhan, ... The Innovation 2 (3), 100141, 2021 | 7859 | 2021 |
| ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data G Yu, DK Smith, H Zhu, Y Guan, TTY Lam Methods in Ecology and Evolution 8 (1), 28-36, 2017 | 3787 | 2017 |
| ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization G Yu, LG Wang, QY He Bioinformatics 31 (14), 2382-2383, 2015 | 3198 | 2015 |
| ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization G Yu, QY He Molecular BioSystems 12 (2), 477-479, 2016 | 1545 | 2016 |
| GOSemSim: an R package for measuring semantic similarity among GO terms and gene products G Yu, F Li, Y Qin, X Bo, Y Wu, S Wang Bioinformatics 26 (7), 976-978, 2010 | 1179 | 2010 |
| Using ggtree to Visualize Data on Tree‐Like Structures G Yu Current Protocols in Bioinformatics 69 (1), e96, 2020 | 1135 | 2020 |
| DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis G Yu, LG Wang, GR Yan, QY He Bioinformatics 31 (4), 608-9, 2015 | 1019 | 2015 |
| IOBR: Multi-omics Immuno-Oncology Biological Research to decode tumor microenvironment and signatures W Liao, D Zeng, Z Ye, R Shen, G Yu, J Wu, Y Xiong, R Zhou, W Qiu, ... Frontiers in Immunology 12, 687975, 2021 | 637* | 2021 |
| Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree G Yu, TTY Lam, H Zhu, Y Guan Molecular Biology and Evolution 35 (12), 3041-3043, 2018 | 597 | 2018 |
| Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, ... Molecular Biology and Evolution 37 (2), 599-603, 2020 | 460 | 2020 |
| RIdeogram: Drawing SVG graphics to visualize and map genome-wide data on the idiograms Z Hao, D Lv, Y Ge, J Shi, D Weijers, G Yu, J Chen PeerJ Computer Science 6, e251, 2020 | 348 | 2020 |
| ggVennDiagram: An intuitive, easy-to-use, and highly customizable R package to generate Venn diagram CH Gao, G Yu, P Cai Frontiers in Genetics 12, 706907, 2021 | 335* | 2021 |
| Enrichplot: visualization of functional enrichment result G Yu R package version 1 (2), 2019 | 273 | 2019 |
| Use ggbreak to effectively utilize plotting space to deal with large datasets and outliers S Xu, M Chen, T Feng, L Zhan, L Zhou, G Yu Frontiers in Genetics 12, 774846, 2021 | 223 | 2021 |
| Gene ontology semantic similarity analysis using GOSemSim G Yu Stem Cell Transcriptional Networks: Methods and Protocols, 207-215, 2020 | 216 | 2020 |
| Gut microbiota and metabolite alterations associated with reduced bone mineral density or bone metabolic indexes in postmenopausal osteoporosis J He, S Xu, B Zhang, C Xiao, Z Chen, F Si, J Fu, X Lin, G Zheng, G Yu, ... Aging (Albany NY) 12 (9), 8583-8604, 2020 | 202 | 2020 |
| ggtreeExtra: Compact visualization of richly annotated phylogenetic data S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou, W Tang, T Feng, M Chen, L Zhan, ... Molecular Biology and Evolution 38 (9), 4039-4042, 2021 | 193 | 2021 |
| MicrobiotaProcess: A comprehensive R package for deep mining microbiome S Xu, L Zhan, W Tang, Q Wang, Z Dai, L Zhou, T Feng, M Chen, T Wu, ... The Innovation 4 (2), 100388, 2023 | 165* | 2023 |
| Exploring Epigenomic Datasets by ChIPseeker Q Wang, M Li, T Wu, L Zhan, L Li, M Chen, W Xie, Z Xie, E Hu, S Xu, G Yu Current Protocols 2 (10), e585, 2022 | 161 | 2022 |
Tommy Tsan-Yuk LamThe University of Hong KongVerified email at hku.hk
