| dbCAN: a web resource for automated carbohydrate-active enzyme annotation Y Yin, X Mao, J Yang, X Chen, F Mao, Y Xu Nucleic acids research 40 (W1), W445-W451, 2012 | 1693 | 2012 |
| DOOR 2.0: presenting operons and their functions through dynamic and integrated views X Mao, Q Ma, C Zhou, X Chen, H Zhang, J Yang, F Mao, W Lai, Y Xu Nucleic acids research 42 (D1), D654-D659, 2014 | 197 | 2014 |
| Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum) X Rao, X Chen, H Shen, Q Ma, G Li, Y Tang, M Pena, W York, TP Frazier, ... Plant Biotechnology Journal 17 (3), 580-593, 2019 | 78 | 2019 |
| DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses J Yang, X Chen, A McDermaid, Q Ma Bioinformatics 33 (16), 2586-2588, 2017 | 58 | 2017 |
| DMINDA: an integrated web server for DNA motif identification and analyses Q Ma, H Zhang, X Mao, C Zhou, B Liu, X Chen, Y Xu Nucleic acids research 42 (W1), W12-W19, 2014 | 45 | 2014 |
| A mixed culture of bacterial cells enables an economic DNA storage on a large scale M Hao, H Qiao, Y Gao, Z Wang, X Qiao, X Chen, H Qi Communications biology 3 (1), 416, 2020 | 42 | 2020 |
| Revisiting operons: an analysis of the landscape of transcriptional units in E. coli X Mao, Q Ma, B Liu, X Chen, H Zhang, Y Xu Bmc Bioinformatics 16, 1-9, 2015 | 38 | 2015 |
| DOOR: a prokaryotic operon database for genome analyses and functional inference H Cao, Q Ma, X Chen, Y Xu Briefings in bioinformatics 20 (4), 1568-1577, 2019 | 37 | 2019 |
| Low-bias manipulation of DNA oligo pool for robust data storage Y Gao, X Chen, H Qiao, Y Ke, H Qi ACS synthetic biology 9 (12), 3344-3352, 2020 | 35 | 2020 |
| Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells X Rao, H Shen, S Pattathil, MG Hahn, I Gelineo-Albersheim, D Mohnen, ... Biotechnology for biofuels 10, 1-18, 2017 | 28 | 2017 |
| A new machine learning-based framework for mapping uncertainty analysis in RNA-Seq read alignment and gene expression estimation A McDermaid, X Chen, Y Zhang, C Wang, S Gu, J Xie, Q Ma Frontiers in genetics 9, 313, 2018 | 26 | 2018 |
| Genome-scale identification of cell-wall-related genes in switchgrass through comparative genomics and computational analyses of transcriptomic data X Chen, Q Ma, X Rao, Y Tang, Y Wang, G Li, C Zhang, X Mao, RA Dixon, ... BioEnergy Research 9, 172-180, 2016 | 19 | 2016 |
| SeqTU: a web server for identification of bacterial transcription units X Chen, WC Chou, Q Ma, Y Xu Scientific reports 7 (1), 43925, 2017 | 15 | 2017 |
| Identification and typing of human enterovirus: a genomic barcode approach C Wei, G Wang, X Chen, H Huang, B Liu, Y Xu, F Li PloS one 6 (10), e26296, 2011 | 13 | 2011 |
| Optimized Recovery Algorithms for RDP Code X Chen, X Ma IEEE Communications Letters 22 (12), 2443-2446, 2018 | 10 | 2018 |
| CINPER: an interactive web system for pathway prediction for prokaryotes X Mao, X Chen, Y Zhang, S Pangle, Y Xu PloS one 7 (12), e51252, 2012 | 7 | 2012 |
| RECTA: regulon identification based on comparative genomics and transcriptomics analysis X Chen, A Ma, A McDermaid, H Zhang, C Liu, H Cao, Q Ma Genes 9 (6), 278, 2018 | 4 | 2018 |
| A probabilistic model-based bi-clustering method for single-cell transcriptomic data analysis S Cao, T Sheng, X Chen, Q Ma, C Zhang bioRxiv, 181362, 2017 | 4 | 2017 |
| Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective Q Ma, X Chen, C Liu, XZ Mao, HY Zhang, F Ji, CG Wu, Y Xu Science China Life Sciences 57, 1121-1130, 2014 | 4 | 2014 |
| Specific biomarkers: detection of cancer biomarkers through high-throughput transcriptomics data W Du, Z Cao, Y Wang, F Zhou, W Pang, X Chen, Y Tian, Y Liang Cognitive Computation 7, 652-666, 2015 | 3 | 2015 |
