Haplotype-resolved diverse human genomes and integrated analysis of structural variation P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... Science 372 (6537), eabf7117, 2021 | 439 | 2021 |
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ... Cell 185 (18), 3426-3440. e19, 2022 | 433 | 2022 |
Accurate long-read de novo assembly evaluation with Inspector Y Chen, Y Zhang, AY Wang, M Gao, Z Chong Genome Biology 22, 1-21, 2021 | 70 | 2021 |
Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders D Porubsky, W Höps, H Ashraf, PH Hsieh, B Rodriguez-Martin, F Yilmaz, ... Cell 185 (11), 1986-2005. e26, 2022 | 69 | 2022 |
Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science 372, eabf7117 P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... | 23 | 2021 |
RNF2 ablation reprograms the tumor-immune microenvironment and stimulates durable NK and CD4+ T-cell-dependent antitumor immunity Z Zhang, L Luo, C Xing, Y Chen, P Xu, M Li, L Zeng, C Li, S Ghosh, ... Nature cancer 2 (10), 1018-1038, 2021 | 15 | 2021 |
Deciphering the exact breakpoints of structural variations using long sequencing reads with DeBreak Y Chen, AY Wang, CA Barkley, Y Zhang, X Zhao, M Gao, MD Edmonds, ... Nature Communications 14 (1), 283, 2023 | 14 | 2023 |
Gene fusion detection and characterization in long-read cancer transcriptome sequencing data with FusionSeeker Y Chen, Y Wang, W Chen, Z Tan, Y Song, ... Cancer research 83 (1), 28-33, 2023 | 7 | 2023 |
Zepeng Mu P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... Yang I Li, Xinghua Shi, Alex R Hastie, Kai Ye, Zechen Chong, Ashley D …, 2021 | 5 | 2021 |
DeBreak: Deciphering the exact breakpoints of structural variations using long sequencing reads Y Chen, A Wang, C Barkley, X Zhao, M Gao, M Edmonds, Z Chong | 2 | 2022 |
Reduced sister chromatid cohesion acts as a tumor penetrance modifier J Wang, HR Thomas, Y Chen, SM Percival, SC Waldrep, RC Ramaker, ... PLoS Genetics 18 (8), e1010341, 2022 | 1 | 2022 |
ClipSV: improving structural variation detection by read extension, spliced alignment and tree-based decision rules P Xu, Y Chen, M Gao, Z Chong NAR Genomics and Bioinformatics 3 (1), lqab003, 2021 | | 2021 |