| CTCF-mediated human 3D genome architecture reveals chromatin topology for transcription Z Tang, OJ Luo, X Li, M Zheng, JJ Zhu, P Szalaj, P Trzaskoma, ... Cell 163 (7), 1611-1627, 2015 | 971 | 2015 |
| Multiplex chromatin interactions with single-molecule precision M Zheng, SZ Tian, D Capurso, M Kim, R Maurya, B Lee, E Piecuch, ... Nature 566 (7745), 558-562, 2019 | 209 | 2019 |
| Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions X Li, OJ Luo, P Wang, M Zheng, D Wang, E Piecuch, JJ Zhu, SZ Tian, ... Nature protocols 12 (5), 899-915, 2017 | 107 | 2017 |
| Glycogen is the primary source of glucose during the lag phase of E. coli proliferation T Yamamotoya, H Dose, Z Tian, A Fauré, Y Toya, M Honma, K Igarashi, ... Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1824 (12), 1442-1448, 2012 | 41 | 2012 |
| Nuclear pore protein NUP210 depletion suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response R Amin, A Shukla, JJ Zhu, S Kim, P Wang, SZ Tian, AD Tran, D Paul, ... Nature Communications 12 (1), 7216, 2021 | 20 | 2021 |
| Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia P Wang, Z Tang, B Lee, JJ Zhu, L Cai, P Szalaj, SZ Tian, M Zheng, ... Genome biology 21, 1-21, 2020 | 14 | 2020 |
| Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model Z Tian, A Fauré, H Mori, H Matsuno BMC Systems Biology 7, 1-10, 2013 | 12 | 2013 |
| MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms M Kim, M Zheng, SZ Tian, B Lee, JH Chuang, Y Ruan Genome biology 20, 1-13, 2019 | 9 | 2019 |
| Pore‐C simultaneously captures genome‐wide multi‐way chromatin interaction and associated DNA methylation status in Arabidopsis Z Li, Y Long, Y Yu, F Zhang, H Zhang, Z Liu, J Jia, W Mo, SZ Tian, ... Plant Biotechnology Journal 20 (6), 1009, 2022 | 6 | 2022 |
| MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification SZ Tian, G Li, D Ning, K Jing, Y Xu, Y Yang, MJ Fullwood, P Yin, G Huang, ... Briefings in Bioinformatics 23 (6), bbac380, 2022 | 4 | 2022 |
| ChIA-DropBox: a novel analysis and visualization pipeline for multiplex chromatin interactions SZ Tian, D Capurso, M Kim, B Lee, M Zheng, Y Ruan bioRxiv, 613034, 2019 | 4 | 2019 |
| Multiplex chromatin interaction analysis with single-molecule precision M Zheng, SZ Tian, R Maurya, B Lee, M Kim, D Capurso, E Piecuch, ... bioRxiv, 252049, 2018 | 3 | 2018 |
| Depletion of nuclear pore protein NUP210 suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response R Amin, A Shukla, JJ Zhu, S Kim, P Wang, SZ Tian, AD Tran, D Paul, ... | 2* | 2020 |
| ChIA-PIPE: A fully automated pipeline for ChIA-PET data analysis and visualization D Capurso, J Wang, SZ Tian, L Cai, S Namburi, B Lee, H Tjong, Z Tang, ... bioRxiv, 506683, 2018 | 2 | 2018 |
| MCI-frcnn: A deep learning method for topological micro-domain boundary detection SZ Tian, P Yin, K Jing, Y Yang, Y Xu, G Huang, D Ning, MJ Fullwood, ... Frontiers in Cell and Developmental Biology 10, 1050769, 2022 | 1 | 2022 |
| ScSmOP: a universal computational pipeline for single-cell single-molecule multiomics data analysis K Jing, Y Xu, Y Yang, P Yin, D Ning, G Huang, Y Deng, G Chen, G Li, ... Briefings in Bioinformatics 24 (6), bbad343, 2023 | | 2023 |
| Multiplex chromatin interaction analysis by signal processing and statistical algorithms M Kim, M Zheng, SZ Tian, D Capurso, B Lee, JH Chuang, Y Ruan bioRxiv, 665232, 2019 | | 2019 |
| Intelligent mechanisms in E. coli in processing carbon sources Z Tian, H Matsuno Journal of Robotics, Networking and Artificial Life 1 (1), 17-21, 2014 | | 2014 |
Kenji Nakahigashi慶應義塾大学先端生命科学研究所Verified email at pobox.com
Kenji Nakahigashi慶應義塾大学先端生命科学研究所Verified email at pobox.com