| GAUGE-annotated microbial transcriptomic data facilitate parallel mining and high-throughput reanalysis to form data-driven hypotheses Z Li, K Koeppen, VI Holden, SL Neff, L Cengher, EG Demers, DL Mould, ... Msystems 6 (2), 10.1128/msystems. 01305-20, 2021 | 9 | 2021 |
| Compendium-wide analysis of Pseudomonas aeruginosa core and accessory genes reveals transcriptional patterns across strains PAO1 and PA14 AJ Lee, G Doing, SL Neff, T Reiter, DA Hogan, CS Greene MSystems 8 (1), e00342-22, 2023 | 8 | 2023 |
| Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia G Doing, AJ Lee, SL Neff, T Reiter, JD Holt, BA Stanton, CS Greene, ... Msystems 8 (1), e00341-22, 2023 | 7 | 2023 |
| CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies SL Neff, TH Hampton, C Puerner, L Cengher, G Doing, AJ Lee, ... Scientific Data 9 (1), 343, 2022 | 7 | 2022 |
| GAUGE-annotated microbial transcriptomic data facilitate parallel mining and high-throughput reanalysis to form data-driven hypotheses. mSystems 6: e01305-20 Z Li, K Koeppen, VI Holden, SL Neff, L Cengher, EG Demers, DL Mould, ... CAS PubMed PubMed Central, 2021 | 5 | 2021 |
| ESKAPE act plus: Pathway activation analysis for bacterial pathogens K Koeppen, TH Hampton, SL Neff, BA Stanton Msystems 7 (6), e00468-22, 2022 | 4 | 2022 |
| Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum SL Neff, G Doing, T Reiter, TH Hampton, CS Greene, DA Hogan Microbiology Spectrum, e03157-23, 2024 | 1 | 2024 |
| Rocket-miR, a translational launchpad for miRNA-based antimicrobial drug development SL Neff, TH Hampton, K Koeppen, S Sarkar, CJ Latario, BD Ross, ... Msystems 8 (6), e00653-23, 2023 | 1 | 2023 |
| Compendium-wide analysis of P. aeruginosa core and accessory genes reveal more nuanced transcriptional patterns AJ Lee, G Doing, SL Neff, T Reiter, DA Hogan, CS Greene bioRxiv, 2022.04. 14.488429, 2022 | 1 | 2022 |
| E. PathDash, pathway activation analysis of public cystic fibrosis pathogen gene expression data L Taub, TH Hampton, S Sarkar, G Doing, SL Neff, CE Finger, KF Fukutani, ... bioRxiv, 2024.04. 10.588749, 2024 | | 2024 |
| 200 RESPIRE: Searchable, downloadable multi-omic data sets for lung disease research T Hampton, M Rogers, S Neff, B Stanton Journal of Cystic Fibrosis 22, S104-S105, 2023 | | 2023 |
| Analysis of Pseudomonas aeruginosa transcription in an ex vivo cystic fibrosis sputum model identifies metal restriction as a gene expression stimulus SL Neff, G Doing, T Reiter, TH Hampton, CS Greene, DA Hogan bioRxiv, 2023 | | 2023 |
| Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia D Georgia, AJ Lee, SL Neff, T Reiter, JD Holt, BA Stanton, CS Greene, ... MSystems 8 (1), 2022 | | 2022 |
