Alex Copeland
Alex Copeland
Joint Genome Institute
Verified email at lbl.gov
Title
Cited by
Cited by
Year
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
CS Chin, DH Alexander, P Marks, AA Klammer, J Drake, C Heiner, ...
Nature methods 10 (6), 563-569, 2013
33362013
The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
D Floudas, M Binder, R Riley, K Barry, RA Blanchette, B Henrissat, ...
Science 336 (6089), 1715-1719, 2012
13592012
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ...
Nature 462 (7276), 1056-1060, 2009
10022009
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
A Kohler, A Kuo, LG Nagy, E Morin, KW Barry, F Buscot, B Canbäck, ...
Nature genetics 47 (4), 410-415, 2015
6622015
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
6302017
A bioinformatician's guide to metagenomics
V Kunin, A Copeland, A Lapidus, K Mavromatis, P Hugenholtz
Microbiology and molecular biology reviews 72 (4), 557-578, 2008
4862008
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000
H Feil, WS Feil, P Chain, F Larimer, G DiBartolo, A Copeland, A Lykidis, ...
Proceedings of the National Academy of Sciences 102 (31), 11064-11069, 2005
4822005
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
RA Ohm, N Feau, B Henrissat, CL Schoch, BA Horwitz, KW Barry, ...
PLoS pathogens 8 (12), e1003037, 2012
4732012
Assembling the marine metagenome, one cell at a time
T Woyke, G Xie, A Copeland, JM Gonzalez, C Han, H Kiss, JH Saw, ...
PloS one 4 (4), e5299, 2009
3672009
The DNA sequence and biology of human chromosome 19
J Grimwood, LA Gordon, A Olsen, A Terry, J Schmutz, J Lamerdin, ...
Nature 428 (6982), 529-535, 2004
3002004
High-resolution metagenomics targets specific functional types in complex microbial communities
MG Kalyuzhnaya, A Lapidus, N Ivanova, AC Copeland, AC McHardy, ...
Nature biotechnology 26 (9), 1029-1034, 2008
2792008
Phylogenetic and phylogenomic overview of the Polyporales
M Binder, A Justo, R Riley, A Salamov, F Lopez-Giraldez, E Sjökvist, ...
Mycologia 105 (6), 1350-1373, 2013
2672013
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks
KS Makarova, MV Omelchenko, EK Gaidamakova, VY Matrosova, ...
PloS one 2 (9), e955, 2007
2552007
One bacterial cell, one complete genome
T Woyke, D Tighe, K Mavromatis, A Clum, A Copeland, W Schackwitz, ...
PloS one 5 (4), e10314, 2010
2282010
Genome Sequence and Analysis of the Soil Cellulolytic Actinomycete Thermobifida fusca YX
A Lykidis, K Mavromatis, N Ivanova, I Anderson, M Land, G DiBartolo, ...
Journal of bacteriology 189 (6), 2477-2486, 2007
2002007
Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
BJ Condon, Y Leng, D Wu, KE Bushley, RA Ohm, R Otillar, J Martin, ...
PLoS genetics 9 (1), e1003233, 2013
1992013
High-resolution phylogenetic microbial community profiling
E Singer, B Bushnell, D Coleman-Derr, B Bowman, RM Bowers, A Levy, ...
The ISME journal 10 (8), 2020-2032, 2016
1692016
Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity
A Lapidus, E Goltsman, S Auger, N Galleron, B Ségurens, C Dossat, ...
Chemico-biological interactions 171 (2), 236-249, 2008
160*2008
The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation
K Mavromatis, ML Land, TS Brettin, DJ Quest, A Copeland, A Clum, ...
PloS one 7 (12), e48837, 2012
1572012
The Genome of the Obligately Intracellular Bacterium Ehrlichia canis Reveals Themes of Complex Membrane Structure and Immune Evasion Strategies
K Mavromatis, CK Doyle, A Lykidis, N Ivanova, MP Francino, P Chain, ...
Journal of bacteriology 188 (11), 4015-4023, 2006
1252006
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