| An interpretable prediction model for identifying N7-methylguanosine sites based on XGBoost and SHAP Y Bi, D Xiang, Z Ge, F Li, C Jia, J Song Molecular Therapy-Nucleic Acids 22, 362-372, 2020 | 120 | 2020 |
| PASSION: an ensemble neural network approach for identifying the binding sites of RBPs on circRNAs C Jia, Y Bi, J Chen, A Leier, F Li, J Song Bioinformatics 36 (15), 4276-4282, 2020 | 63 | 2020 |
| EnsemPseU: identifying pseudouridine sites with an ensemble approach Y Bi, D Jin, C Jia Ieee Access 8, 79376-79382, 2020 | 19 | 2020 |
| Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations Y Bi, F Li, X Guo, Z Wang, T Pan, Y Guo, GI Webb, J Yao, C Jia, J Song Briefings in Bioinformatics 23 (6), bbac467, 2022 | 9 | 2022 |
| ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species R Chen, F Li, X Guo, Y Bi, C Li, S Pan, LJM Coin, J Song Briefings in Bioinformatics 24 (3), bbad170, 2023 | 8 | 2023 |
| Digerati–A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins F Li, X Guo, Y Bi, R Jia, ME Pitt, S Pan, S Li, RB Gasser, LJM Coin, J Song Computers in Biology and Medicine 163, 107155, 2023 | 6 | 2023 |
| Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification Z Wang, Y Bi, T Pan, X Wang, C Bain, R Bassed, S Imoto, J Yao, RJ Daly, ... Bioinformatics 39 (3), btad114, 2023 | 4 | 2023 |
| PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships T Pan, C Li, Y Bi, Z Wang, RB Gasser, AW Purcell, T Akutsu, GI Webb, ... Bioinformatics 39 (3), btad094, 2023 | 3 | 2023 |
| scDFN: Enhancing single-cell RNA-seq Clustering with Deep Fusion Networks T Liu, Y Bi, X Guo, Q Zou, C Jia, F Li | | 2024 |
| A deep learning-based model integrating base-pairing patterns improves microRNA target site prediction Y Bi, F Li, C Wang, T Pan, C Davidovich, GI Webb, J Song bioRxiv, 2024.05. 05.592612, 2024 | | 2024 |
| MERITS: a web-based integrated Mycobacterial PE/PPE protein database Z He, C Wang, X Guo, H Sun, Y Bi, ME Pitt, C Li, J Song, LJM Coin, F Li Bioinformatics Advances 4 (1), vbae035, 2024 | | 2024 |
| Allocator is a graph neural network-based framework for mRNA subcellular localization prediction F Li, Y Bi, X Guo, X Tan, C Wang, S Pan bioRxiv, 2023.12. 14.571762, 2023 | | 2023 |
