Davide Cacchiarelli
Davide Cacchiarelli
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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
C Trapnell, D Cacchiarelli, J Grimsby, P Pokharel, S Li, M Morse, ...
Nature biotechnology 32 (4), 381-386, 2014
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
M Cesana, D Cacchiarelli, I Legnini, T Santini, O Sthandier, M Chinappi, ...
Cell 147 (2), 358-369, 2011
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5′ sites
S Schwartz, MR Mumbach, M Jovanovic, T Wang, K Maciag, GG Bushkin, ...
Cell reports 8 (1), 284-296, 2014
LIN28 regulates stem cell metabolism and conversion to primed pluripotency
J Zhang, S Ratanasirintrawoot, S Chandrasekaran, Z Wu, SB Ficarro, ...
Cell stem cell 19 (1), 66-80, 2016
Extracellular matrix hydrogel derived from decellularized tissues enables endodermal organoid culture
GG Giobbe, C Crowley, C Luni, S Campinoti, M Khedr, K Kretzschmar, ...
Nature communications 10 (1), 5658, 2019
miRNAs as serum biomarkers for Duchenne muscular dystrophy
D Cacchiarelli, I Legnini, J Martone, V Cazzella, A d'Amico, E Bertini, ...
EMBO molecular medicine 3 (5), 258-265, 2011
MicroRNAs involved in molecular circuitries relevant for the Duchenne muscular dystrophy pathogenesis are controlled by the dystrophin/nNOS pathway
D Cacchiarelli, J Martone, E Girardi, M Cesana, T Incitti, M Morlando, ...
Cell metabolism 12 (4), 341-351, 2010
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency
D Cacchiarelli, C Trapnell, MJ Ziller, M Soumillon, M Cesana, R Karnik, ...
Cell 162 (2), 412-424, 2015
Characterization of directed differentiation by high-throughput single-cell RNA-Seq
M Soumillon, D Cacchiarelli, S Semrau, A van Oudenaarden, ...
BioRxiv, 003236, 2014
Dissecting neural differentiation regulatory networks through epigenetic footprinting
MJ Ziller, R Edri, Y Yaffe, J Donaghey, R Pop, W Mallard, R Issner, ...
Nature 518 (7539), 355-359, 2015
Combining NGN2 programming with developmental patterning generates human excitatory neurons with NMDAR-mediated synaptic transmission
R Nehme, E Zuccaro, SD Ghosh, C Li, JL Sherwood, O Pietilainen, ...
Cell reports 23 (8), 2509-2523, 2018
miR‐31 modulates dystrophin expression: new implications for Duchenne muscular dystrophy therapy
D Cacchiarelli, T Incitti, J Martone, M Cesana, V Cazzella, T Santini, ...
EMBO reports 12 (2), 136-141, 2011
Coupled RNA processing and transcription of intergenic primary microRNAs
M Ballarino, F Pagano, E Girardi, M Morlando, D Cacchiarelli, ...
Molecular and cellular biology 29 (20), 5632-5638, 2009
Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer
ZD Smith, J Shi, H Gu, J Donaghey, K Clement, D Cacchiarelli, A Gnirke, ...
Nature 549 (7673), 543-547, 2017
Genetic determinants and epigenetic effects of pioneer-factor occupancy
J Donaghey, S Thakurela, J Charlton, JS Chen, ZD Smith, H Gu, R Pop, ...
Nature genetics 50 (2), 250-258, 2018
Phenotypic characterization of a comprehensive set of MAPK1/ERK2 missense mutants
L Brenan, A Andreev, O Cohen, S Pantel, A Kamburov, D Cacchiarelli, ...
Cell reports 17 (4), 1171-1183, 2016
Genome-wide tracking of dCas9-methyltransferase footprints
C Galonska, J Charlton, AL Mattei, J Donaghey, K Clement, H Gu, ...
Nature communications 9 (1), 597, 2018
Pseudo-temporal ordering of individual cells reveals dynamics and regulators of cell fate decisions
C Trapnell, D Cacchiarelli, J Grimsby, P Pokharel, S Li, M Morse, ...
Nature biotechnology 32 (4), 381, 2014
Triple vectors expand AAV transfer capacity in the retina
A Maddalena, P Tornabene, P Tiberi, R Minopoli, A Manfredi, M Mutarelli, ...
Molecular Therapy 26 (2), 524-541, 2018
Cross-regulation between TDP-43 and paraspeckles promotes pluripotency-differentiation transition
M Modic, M Grosch, G Rot, S Schirge, T Lepko, T Yamazaki, FCY Lee, ...
Molecular cell 74 (5), 951-965. e13, 2019
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