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Julia A. Palacios
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Year
No evidence for recent selection at FOXP2 among diverse human populations
EG Atkinson, AJ Audesse, JA Palacios, DM Bobo, AE Webb, ...
Cell 174 (6), 1424-1435. e15, 2018
1152018
phylodyn: an R package for phylodynamic simulation and inference
MD Karcher, JA Palacios, S Lan, VN Minin
Molecular ecology resources 17 (1), 96-100, 2017
562017
Quantifying and mitigating the effect of preferential sampling on phylodynamic inference
MD Karcher, JA Palacios, T Bedford, MA Suchard, VN Minin
PLoS computational biology 12 (3), e1004789, 2016
552016
Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies
JA Palacios, VN Minin
Biometrics 69 (1), 8-18, 2013
532013
An Efficient Bayesian Inference Framework for Coalescent-Based Nonparametric Phylodynamics
S Lan, JA Palacios, M Karcher, VN Minin, B Shahbaba
Bioinformatics, 2015
402015
Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies
JA Palacios, W John, S Ramachandran
Genetics 201, 2015
292015
Integrated nested Laplace approximation for Bayesian nonparametric phylodynamics
JA Palacios, VN Minin
arXiv preprint arXiv:1210.4908, 2012
282012
Distance metrics for ranked evolutionary trees
J Kim, NA Rosenberg, JA Palacios
Proceedings of the National Academy of Sciences 117 (46), 28876-28886, 2020
272020
Phylogeography of the Trans-Volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern Mexico
AD Leaché, JA Palacios, VN Minin, RW Bryson Jr
Biological Journal of the Linnean Society 110 (4), 852-865, 2013
262013
Bayesian estimation of population size changes by sampling Tajima’s trees
JA Palacios, A Véber, L Cappello, Z Wang, J Wakeley, S Ramachandran
Genetics 213 (3), 967-986, 2019
182019
High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs
JE Gorzynski, HN De Jong, D Amar, C Hughes, A Ioannidis, R Bierman, ...
medRxiv, 2020.07. 27.20163147, 2020
132020
Bayesian Change Point Detection with Spike-and-Slab Priors
L Cappello, OH Madrid Padilla, JA Palacios
Journal of Computational and Graphical Statistics 32 (4), 1488-1500, 2023
9*2023
Adaptive preferential sampling in phylodynamics with an application to SARS-CoV-2
L Cappello, JA Palacios
Journal of Computational and Graphical Statistics 31 (2), 541-552, 2022
92022
Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting
L Cappello, JA Palacios
The annals of applied statistics 14 (2), 727, 2020
82020
The impact of the COVID-19 preventive measures on influenza transmission: molecular and epidemiological evidence
LK Tran, DW Huang, NK Li, LM Li, JA Palacios, HH Chang
International Journal of Infectious Diseases 116, 11-13, 2022
72022
The Tajima heterochronous n-coalescent: inference from heterochronously sampled molecular data
L Cappello, A Veber, JA Palacios
arXiv preprint arXiv:2004.06826, 2020
72020
Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy
VN Parikh, AG Ioannidis, D Jimenez-Morales, JE Gorzynski, HN De Jong, ...
Nature communications 13 (1), 5107, 2022
52022
Statistical challenges in tracking the evolution of SARS-CoV-2
L Cappello, J Kim, S Liu, JA Palacios
Statistical science: a review journal of the Institute of Mathematical …, 2022
52022
Exact limits of inference in coalescent models
JE Johndrow, JA Palacios
Theoretical population biology 125, 75-93, 2019
52019
An adjacent-swap Markov chain on coalescent trees
M Simper, JA Palacios
Journal of Applied Probability 59 (4), 1243-1260, 2022
42022
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Articles 1–20