No evidence for recent selection at FOXP2 among diverse human populations EG Atkinson, AJ Audesse, JA Palacios, DM Bobo, AE Webb, ... Cell 174 (6), 1424-1435. e15, 2018 | 127 | 2018 |
phylodyn: an R package for phylodynamic simulation and inference MD Karcher, JA Palacios, S Lan, VN Minin Molecular ecology resources 17 (1), 96-100, 2017 | 62 | 2017 |
Quantifying and mitigating the effect of preferential sampling on phylodynamic inference MD Karcher, JA Palacios, T Bedford, MA Suchard, VN Minin PLoS computational biology 12 (3), e1004789, 2016 | 60 | 2016 |
Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies JA Palacios, VN Minin Biometrics 69 (1), 8-18, 2013 | 53 | 2013 |
An Efficient Bayesian Inference Framework for Coalescent-Based Nonparametric Phylodynamics S Lan, JA Palacios, M Karcher, VN Minin, B Shahbaba Bioinformatics, 2015 | 43 | 2015 |
Distance metrics for ranked evolutionary trees J Kim, NA Rosenberg, JA Palacios Proceedings of the National Academy of Sciences 117 (46), 28876-28886, 2020 | 34 | 2020 |
Integrated nested Laplace approximation for Bayesian nonparametric phylodynamics JA Palacios, VN Minin arXiv preprint arXiv:1210.4908, 2012 | 31 | 2012 |
Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies JA Palacios, W John, S Ramachandran Genetics 201, 2015 | 29 | 2015 |
Phylogeography of the Trans-Volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern Mexico AD Leaché, JA Palacios, VN Minin, RW Bryson Jr Biological Journal of the Linnean Society 110 (4), 852-865, 2013 | 29 | 2013 |
Bayesian estimation of population size changes by sampling Tajima’s trees JA Palacios, A Véber, L Cappello, Z Wang, J Wakeley, S Ramachandran Genetics 213 (3), 967-986, 2019 | 18 | 2019 |
High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs JE Gorzynski, HN De Jong, D Amar, C Hughes, A Ioannidis, R Bierman, ... medRxiv, 2020.07. 27.20163147, 2020 | 13 | 2020 |
Adaptive preferential sampling in phylodynamics with an application to SARS-CoV-2 L Cappello, JA Palacios Journal of Computational and Graphical Statistics 31 (2), 541-552, 2022 | 11 | 2022 |
The impact of the COVID-19 preventive measures on influenza transmission: molecular and epidemiological evidence LK Tran, DW Huang, NK Li, LM Li, JA Palacios, HH Chang International Journal of Infectious Diseases 116, 11-13, 2022 | 10 | 2022 |
Bayesian Change Point Detection with Spike-and-Slab Priors L Cappello, OH Madrid Padilla, JA Palacios Journal of Computational and Graphical Statistics 32 (4), 1488-1500, 2023 | 9* | 2023 |
Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting L Cappello, JA Palacios The annals of applied statistics 14 (2), 727, 2020 | 9 | 2020 |
Statistical summaries of unlabelled evolutionary trees R Samyak, JA Palacios Biometrika 111 (1), 171-193, 2024 | 7* | 2024 |
Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy VN Parikh, AG Ioannidis, D Jimenez-Morales, JE Gorzynski, HN De Jong, ... Nature communications 13 (1), 5107, 2022 | 7 | 2022 |
The Tajima heterochronous n-coalescent: inference from heterochronously sampled molecular data L Cappello, A Veber, JA Palacios arXiv preprint arXiv:2004.06826, 2020 | 7 | 2020 |
Statistical challenges in tracking the evolution of SARS-CoV-2 L Cappello, J Kim, S Liu, JA Palacios Statistical science: a review journal of the Institute of Mathematical …, 2022 | 6 | 2022 |
An adjacent-swap Markov chain on coalescent trees M Simper, JA Palacios Journal of Applied Probability 59 (4), 1243-1260, 2022 | 5 | 2022 |