| iStable: off-the-shelf predictor integration for predicting protein stability changes CW Chen, J Lin, YW Chu BMC bioinformatics 14 (2), 1-14, 2013 | 248 | 2013 |
| iStable 2.0: predicting protein thermal stability changes by integrating various characteristic modules CW Chen, MH Lin, CC Liao, HP Chang, YW Chu Computational and structural biotechnology journal 18, 622-630, 2020 | 84 | 2020 |
| Characterization of Oncidium ‘Gower Ramsey’ Transcriptomes using 454 GS-FLX Pyrosequencing and Their Application to the Identification of Genes Associated … YY Chang, YW Chu, CW Chen, WM Leu, HF Hsu, CH Yang Plant and Cell Physiology 52 (9), 1532-1545, 2011 | 61 | 2011 |
| SUMOgo: Prediction of sumoylation sites on lysines by motif screening models and the effects of various post-translational modifications CC Chang, CH Tung, CW Chen, CH Tu, YW Chu Scientific reports 8 (1), 1-10, 2018 | 41 | 2018 |
| siPRED: Predicting siRNA Efficacy Using Various Characteristic Methods WJ Pan, CW Chen, YW Chu PloS one 6 (11), e27602, 2011 | 25 | 2011 |
| N-GlycoGo: Predicting Protein N-Glycosylation Sites on Imbalanced Data Sets by Using Heterogeneous and Comprehensive Strategy CH Chien, CC Chang, SH Lin, CW Chen, ZH Chang, YW Chu IEEE Access 8, 165944-165950, 2020 | 16 | 2020 |
| miRgo: integrating various off-the-shelf tools for identification of microRNA–target interactions by heterogeneous features and a novel evaluation indicator YW Chu, KP Chang, CW Chen, YT Liang, ZT Soh, LC Hsieh Scientific reports 10 (1), 1-11, 2020 | 16 | 2020 |
| Predicting human protein subcellular localization by heterogeneous and comprehensive approaches CH Tung, CW Chen, HH Sun, YW Chu PloS one 12 (6), e0178832, 2017 | 12 | 2017 |
| GasPhos: Protein Phosphorylation Site Prediction Using a New Feature Selection Approach with a GA-Aided Ant Colony System CW Chen, LY Huang, CF Liao, KP Chang, YW Chu International journal of molecular sciences 21 (21), 7891, 2020 | 11 | 2020 |
| dBMHCC: A comprehensive hepatocellular carcinoma (HCC) biomarker database provides a reliable prediction system for novel HCC phosphorylated biomarkers YW Chu, CH Chien, MI Sung, CW Chen, YT Chen PloS one 15 (6), e0234084, 2020 | 10 | 2020 |
| 2-DE combined with two-layer feature selection accurately establishes the origin of oolong tea HJ Chien, YW Chu, CW Chen, YM Juang, MW Chien, CW Liu, CC Wu, ... Food chemistry 211, 392-399, 2016 | 10 | 2016 |
| Conservation region finding for influenza A viruses by machine learning methods of N-linked glycosylation sites and B-cell epitopes JH Liu, CC Chang, CW Chen, LT Wong, YW Chu Mathematical biosciences 315, 108217, 2019 | 9 | 2019 |
| KStable: A Computational Method for Predicting Protein Thermal Stability Changes by K-Star with Regular-mRMR Feature Selection CW Chen, KP Chang, CW Ho, HP Chang, YW Chu Entropy 20 (12), 988, 2018 | 9 | 2018 |
| DEsi: A design engine of siRNA that integrates SVMs prediction and feature filters PC Chang, WJ Pan, CW Chen, YT Chen, YW Chu Biocatalysis and Agricultural Biotechnology 1 (2), 129-134, 2012 | 9 | 2012 |
| EAT-Rice: A predictive model for flanking gene expression of T-DNA insertion activation-tagged rice mutants by machine learning approaches CC Liao, LJ Chen, SF Lo, CW Chen, YW Chu PLoS computational biology 15 (5), e1006942, 2019 | 8 | 2019 |
| MADS-Box Gene Classification in Angiosperms by Clustering and Machine Learning Approaches YT Chen, CC Chang, CW Chen, KC Chen, YW Chu Frontiers in genetics 9, 707, 2019 | 8 | 2019 |
| Sequence-based Structural B-cell Epitope Prediction by Using Two Layer SVM Model and Association Rule Features JH Kuo, CC Chang, CW Chen, HH Liang, CY Chang, YW Chu Current Bioinformatics 15 (3), 246-252, 2020 | 7 | 2020 |
| QuaBingo: A Prediction System for Protein Quaternary Structure Attributes Using Block Composition CH Tung, CW Chen, RC Guo, HF Ng, YW Chu BioMed research international 2016, 2016 | 7 | 2016 |
| PClass: Protein Quaternary Structure Classification by Using Bootstrapping Strategy as Model Selection CC Huang, CC Chang, CW Chen, S Ho, HP Chang, YW Chu Genes 9 (2), 91, 2018 | 4 | 2018 |
| QUATgo: Protein quaternary structural attributes predicted by two-stage machine learning approaches with heterogeneous feature encoding CH Tung, CH Chien, CW Chen, LY Huang, YN Liu, YW Chu PloS one 15 (4), e0232087, 2020 | 2 | 2020 |
