| miRquant 2.0: an expanded tool for accurate annotation and quantification of microRNAs and their isomiRs from small RNA-sequencing data M Kanke, J Baran-Gale, J Villanueva, P Sethupathy Journal of integrative bioinformatics 13 (5), 47-56, 2016 | 44 | 2016 |
| Integrative genome-scale analyses reveal post-transcriptional signatures of early human small intestinal development in a directed differentiation organoid model YH Hung, M Capeling, JW Villanueva, M Kanke, MT Shanahan, S Huang, ... BMC genomics 24 (1), 641, 2023 | 4 | 2023 |
| Comprehensive microRNA analysis across genome-edited colorectal cancer organoid models reveals miR-24 as a candidate regulator of cell survival JW Villanueva, L Kwong, T Han, SA Martinez, MT Shanahan, M Kanke, ... Bmc Genomics 23 (1), 792, 2022 | 4 | 2022 |
| Single cell analysis reveals multi-faceted miR-375 regulation of the intestinal crypt MT Shanahan, M Kanke, AP Singh, JW Villanueva, AJ McNairn, ... bioRxiv, 2020.10. 01.321612, 2020 | 2 | 2020 |
| Aberrant miR-29 is a predictive feature of severe phenotypes in pediatric Crohn’s disease AJ Shumway, MT Shanahan, E Hollville, K Chen, C Beasley, ... JCI insight 9 (4), 2024 | | 2024 |
| Multi-omic study of genome-edited human colonoid models of colorectal cancer reveal genotype-specific patterns of microRNA regulation JW Villanueva, FC Pan, EJ Rice, YH Hung, M Winnicki, S Chen, ... bioRxiv, 2023.07. 28.551007, 2023 | | 2023 |
| Genomic Characterization of Mutation-Specific Micro RNA Regulators in Organoid Models of Colorectal Cancer JW Villanueva Cornell University, 2023 | | 2023 |
