| WikiPathways: connecting communities M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers, ... Nucleic Acids Research 49 (D1), D613-D621, 2021 | 599 | 2021 |
| A semi-automated workflow for FAIR maturity indicators in the life sciences A Ammar, S Bonaretti, L Winckers, J Quik, M Bakker, D Maier, I Lynch, ... Nanomaterials 10 (10), 2068, 2020 | 26 | 2020 |
| FAIR assessment tools: evaluating use and performance NA Krans, A Ammar, P Nymark, EL Willighagen, MI Bakker, JTK Quik NanoImpact 27, 100402, 2022 | 14 | 2022 |
| From principles to reality. FAIR implementation in the nanosafety community VI Dumit, A Ammar, MI Bakker, MA Bañares, C Bossa, A Costa, H Cowie, ... Nano Today 51, 101923, 2023 | 7 | 2023 |
| PSnpBind: a database of mutated binding site protein–ligand complexes constructed using a multithreaded virtual screening workflow A Ammar, R Cavill, C Evelo, E Willighagen Journal of Cheminformatics 14 (1), 8, 2022 | 6 | 2022 |
| Fact Validation with Knowledge Graph Embeddings. A Ammar, R Celebi ISWC Satellites, 125-128, 2019 | 6 | 2019 |
| Knowledge graphs and wikidata subsetting JE Labra-Gayo, AG Hevia, DF Álvarez, A Ammar, D Brickley, AJG Gray, ... BioHackrXiv, 2021 | 5 | 2021 |
| Semantic Answer Type Prediction by Using BERT classifier and Rule-based Ranking Strategies X Ning, A Ammar, A Yilmaz, S Mehryar, R Celebi Proceedings of the SeMantic Answer Type and Relation Prediction Task at ISWC …, 2022 | 4 | 2022 |
| Enhancement and Reusage of Biomedical Knowledge Graph Subsets JE Labra-Gayo, ACG Cavazos, A Waagmeester, N Hofmann, ... BioHackrXiv, 2022 | 3 | 2022 |
| PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity A Ammar, R Cavill, C Evelo, E Willighagen Journal of Cheminformatics 15 (1), 1-21, 2023 | 2 | 2023 |
| Harmonising knowledge for safer materials via the" NanoCommons" Knowledge Base D Maier, T Exner, AG Papadiamantis, A Ammar, A Tsoumanis, P Doganis, ... Frontiers in Physics 11, 1271842, 2023 | 2 | 2023 |
| A Methodology for Hierarchical Classification of Semantic Answer Types of Questions. A Ammar, S Mehryar, R Celebi SMART@ ISWC, 41-48, 2020 | 2 | 2020 |
| A data reusability assessment in the nanosafety domain based on the NSDRA framework followed by an exploratory quantitative structure activity relationships (QSAR) modeling … I Furxhi, E Willighagen, C Evelo, A Costa, D Gardini, A Ammar NanoImpact 31, 100475, 2023 | 1 | 2023 |
| An ETL pipeline to construct the Intrinsically Disordered Proteins Knowledge Graph (IDP-KG) using Bioschemas JSON-LD data dumps. BioHackrXiv A Ammar, I Mičetić, AJG Gray | 1 | 2022 |
| FAIR assessment of nanosafety data reusability with community standards A Ammar, C Evelo, E Willighagen | 1 | 2022 |
| Wikidata subsetting: Approaches, tools, and evaluation SA Hosseini Beghaeiraveri, JE Labra Gayo, A Waagmeester, A Ammar, ... Semantic Web, 1-27, 0 | 1 | |
| BioHackEU23 report: Extending interoperability of experimental data using modular queries across biomedical resources Y Gadiya, A Ammar, E Willighagen, D Martinat, AC Sima, H Balci, ... OSF, 2023 | | 2023 |
| Exploring Adverse Outcome Pathways for Nanomaterials with semantic web technologies J van Rijn, M Martens, A Ammar, MR Cimpan, V Fessard, P Hoet, ... | | 2023 |
