| Global landscape of protein complexes in the yeast Saccharomyces cerevisiae NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ... Nature 440 (7084), 637-643, 2006 | 3445 | 2006 |
| Sequence-specific error profile of Illumina sequencers K Nakamura, T Oshima, T Morimoto, S Ikeda, H Yoshikawa, Y Shiwa, ... Nucleic acids research 39 (13), e90-e90, 2011 | 747 | 2011 |
| KNApSAcK family databases: integrated metabolite–plant species databases for multifaceted plant research FM Afendi, T Okada, M Yamazaki, A Hirai-Morita, Y Nakamura, ... Plant and Cell Physiology 53 (2), e1-e1, 2012 | 697 | 2012 |
| Development and implementation of an algorithm for detection of protein complexes in large interaction networks M Altaf-Ul-Amin, Y Shinbo, K Mihara, K Kurokawa, S Kanaya BMC bioinformatics 7, 1-13, 2006 | 571 | 2006 |
| Large-scale identification of protein–protein interaction of Escherichia coli K-12 Genome Research 16 (5), 686-691, 2006 | 505 | 2006 |
| KNApSAcK: a comprehensive species-metabolite relationship database Y Shinbo, Y Nakamura, M Altaf-Ul-Amin, H Asahi, K Kurokawa, M Arita, ... Plant metabolomics, 165-181, 2006 | 237 | 2006 |
| Metabolomics of medicinal plants: the importance of multivariate analysis of analytical chemistry data T Okada, F Mochamad Afendi, M Altaf-Ul-Amin, H Takahashi, ... Current computer-aided drug design 6 (3), 179-196, 2010 | 133 | 2010 |
| KNApSAcK metabolite activity database for retrieving the relationships between metabolites and biological activities Y Nakamura, F Mochamad Afendi, A Kawsar Parvin, N Ono, K Tanaka, ... Plant and Cell Physiology 55 (1), e7-e7, 2014 | 130 | 2014 |
| Systems biology in the context of big data and networks M Altaf-Ul-Amin, FM Afendi, SK Kiboi, S Kanaya BioMed research international 2014, 2014 | 118 | 2014 |
| Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry H Takahashi, K Kai, Y Shinbo, K Tanaka, D Ohta, T Oshima, ... Analytical and Bioanalytical Chemistry 391, 2769-2782, 2008 | 86 | 2008 |
| PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein … S Kikugawa, K Nishikata, K Murakami, Y Sato, M Suzuki, M Altaf-Ul-Amin, ... BMC systems biology 6, 1-14, 2012 | 82 | 2012 |
| Data mining methods for omics and knowledge of crude medicinal plants toward big data biology FM Afendi, N Ono, Y Nakamura, K Nakamura, LK Darusman, N Kibinge, ... Computational and Structural Biotechnology Journal 4 (5), e201301010, 2013 | 72 | 2013 |
| KNApSAcK-3D: a three-dimensional structure database of plant metabolites K Nakamura, N Shimura, Y Otabe, A Hirai-Morita, Y Nakamura, N Ono, ... Plant and Cell Physiology 54 (2), e4-e4, 2013 | 71 | 2013 |
| Novel approach to classify plants based on metabolite-content similarity K Liu, AA Abdullah, M Huang, T Nishioka, M Altaf-Ul-Amin, S Kanaya BioMed research international 2017, 2017 | 64 | 2017 |
| Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks R Eguchi, N Ono, A Hirai Morita, T Katsuragi, S Nakamura, M Huang, ... BMC bioinformatics 20, 1-13, 2019 | 49 | 2019 |
| Development and mining of a volatile organic compound database AA Abdullah, M Altaf-Ul-Amin, N Ono, T Sato, T Sugiura, AH Morita, ... BioMed research international 2015, 2015 | 41 | 2015 |
| DPClus: a density-periphery based graph clustering software mainly focused on detection of protein complexes in interaction networks M Altaf-Ul-Amin, H Tsuji, K Kurokawa, H Asahi, Y Shinbo, S Kanaya Journal of Computer Aided Chemistry 7, 150-156, 2006 | 40 | 2006 |
| Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes M Wada, H Takahashi, M Altaf-Ul-Amin, K Nakamura, MY Hirai, D Ohta, ... Gene 503 (1), 56-64, 2012 | 39 | 2012 |
| A novel CNN-based framework for classification of signal quality and sleep position from a capacitive ECG measurement K Kido, T Tamura, N Ono, MD Altaf-Ul-Amin, M Sekine, S Kanaya, ... Sensors 19 (7), 1731, 2019 | 35 | 2019 |
| Supervised clustering based on DPClusO: Prediction of plant-disease relations using Jamu formulas of KNApSAcK database SH Wijaya, H Husnawati, FM Afendi, I Batubara, LK Darusman, ... BioMed research international 2014, 2014 | 35 | 2014 |
Shigehiko KanayaProfessor of Computational Systems biology Lab, Nara Institute of Science and Technology (NAIST)Verified email at gtc.naist.jp
