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San Emmanuel James
San Emmanuel James
Other namesJames Emmanuel San, Emmanuel James San
Bioinformatician II, Duke Human Vaccine Institute
Verified email at ukzn.ac.za
Title
Cited by
Cited by
Year
Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
14682021
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ...
Nature 603 (7902), 679-686, 2022
14252022
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
medrxiv, 2020.12. 21.20248640, 2020
11972020
Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization
S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ...
Nature 602 (7898), 654-656, 2022
10152022
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa
H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ...
Nature medicine 28 (9), 1785-1790, 2022
5212022
SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection
S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ...
MedRxiv, 2021
3662021
Sixteen novel lineages of SARS-CoV-2 in South Africa
H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ...
Nature medicine 27 (3), 440-446, 2021
3632021
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages
DP Martin, S Weaver, H Tegally, JE San, SD Shank, E Wilkinson, ...
Cell 184 (20), 5189-5200. e7, 2021
2512021
Kosakovsky Pond SL, Weaver S, Martin D, Lessells RJ, Bhiman JN, Williamson C, de Oliveira T. Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
2152021
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ...
Science 374 (6566), 423-431, 2021
1892021
SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape
S Cele, F Karim, G Lustig, JE San, T Hermanus, H Tegally, J Snyman, ...
Cell host & microbe 30 (2), 154-162. e5, 2022
1672022
Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
1472021
Omicron BA. 4/BA. 5 escape neutralizing immunity elicited by BA. 1 infection
K Khan, F Karim, Y Ganga, M Bernstein, Z Jule, K Reedoy, S Cele, ...
Nature communications 13 (1), 4686, 2022
1462022
Continued emergence and evolution of Omicron in South Africa: New BA. 4 and BA. 5 lineages
H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ...
MedRxiv, 2022.05. 01.22274406, 2022
1062022
Persistent SARS-CoV-2 infection and intra-host evolution in association with advanced HIV infection
F Karim, MYS Moosa, BI Gosnell, S Cele, J Giandhari, S Pillay, H Tegally, ...
MedRxiv, 2021.06. 03.21258228, 2021
982021
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ...
Science 378 (6615), eabq5358, 2022
922022
Whole genome sequencing of SARS-CoV-2: adapting Illumina protocols for quick and accurate outbreak investigation during a pandemic
S Pillay, J Giandhari, H Tegally, E Wilkinson, B Chimukangara, R Lessells, ...
Genes 11 (8), 949, 2020
862020
HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens
W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ...
Cell host & microbe 29 (7), 1093-1110, 2021
852021
Omicron sub-lineages BA. 4/BA. 5 escape BA. 1 infection elicited neutralizing immunity
K Khan, F Karim, Y Ganga, M Bernstein, Z Jule, K Reedoy, S Cele, ...
MedRxiv, 2022.04. 29.22274477, 2022
812022
Next generation sequencing and bioinformatics analysis of family genetic inheritance
AM Kanzi, JE San, B Chimukangara, E Wilkinson, M Fish, V Ramsuran, ...
Frontiers in Genetics 11, 544162, 2020
782020
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