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Yi Xing
Yi Xing
Professor, Children's Hospital of Philadelphia & University of Pennsylvania
Verified email at ucla.edu - Homepage
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Cited by
Year
A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function
JD Cahoy, B Emery, A Kaushal, LC Foo, JL Zamanian, KS Christopherson, ...
Journal of Neuroscience 28 (1), 264-278, 2008
33222008
rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
S Shen, JW Park, Z Lu, L Lin, MD Henry, YN Wu, Q Zhou, Y Xing
Proceedings of the National Academy of Sciences 111 (51), E5593-E5601, 2014
18992014
m6A RNA modification controls cell fate transition in mammalian embryonic stem cells
PJ Batista, B Molinie, J Wang, K Qu, J Zhang, L Li, DM Bouley, E Lujan, ...
Cell stem cell 15 (6), 707-719, 2014
11192014
The bifunctional microRNA miR-9/miR-9* regulates REST and CoREST and is downregulated in Huntington's disease
AN Packer, Y Xing, SQ Harper, L Jones, BL Davidson
Journal of Neuroscience 28 (53), 14341-14346, 2008
7962008
Structure and activity of putative intronic miRNA promoters
AM Monteys, RM Spengler, J Wan, L Tecedor, KA Lennox, Y Xing, ...
Rna 16 (3), 495-505, 2010
5242010
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
KF Au, H Jiang, L Lin, Y Xing, WH Wong
Nucleic acids research 38 (14), 4570-4578, 2010
4482010
An ESRP‐regulated splicing programme is abrogated during the epithelial–mesenchymal transition
CC Warzecha, P Jiang, K Amirikian, KA Dittmar, H Lu, S Shen, W Guo, ...
The EMBO journal 29 (19), 3286-3300, 2010
4072010
Nonallele-specific silencing of mutant and wild-type huntingtin demonstrates therapeutic efficacy in Huntington's disease mice
RL Boudreau, JL McBride, I Martins, S Shen, Y Xing, BJ Carter, ...
Molecular Therapy 17 (6), 1053-1063, 2009
3992009
MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data
S Shen, JW Park, J Huang, KA Dittmar, Z Lu, Q Zhou, RP Carstens, Y Xing
Nucleic Acids Research, 2012
3632012
Genome-wide maps of m6A circRNAs identify widespread and cell-type-specific methylation patterns that are distinct from mRNAs
C Zhou, B Molinie, K Daneshvar, JV Pondick, J Wang, ...
Cell reports 20 (9), 2262-2276, 2017
3522017
m6A-LAIC-seq reveals the census and complexity of the m6A epitranscriptome
B Molinie, J Wang, KS Lim, R Hillebrand, Z Lu, N Van Wittenberghe, ...
Nature Methods, 2016
3422016
The expanding landscape of alternative splicing variation in human populations
E Park, Z Pan, Z Zhang, L Lin, Y Xing
The American Journal of Human Genetics 102 (1), 11-26, 2018
3282018
Alternative splicing and RNA selection pressure—evolutionary consequences for eukaryotic genomes
Y Xing, C Lee
Nature Reviews Genetics 7 (7), 499-509, 2006
3082006
The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events
CC Warzecha, S Shen, Y Xing, RP Carstens
RNA biology 6 (5), 546-562, 2009
2412009
BS69/ZMYND11 reads and connects histone H3. 3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing
R Guo, L Zheng, JW Park, R Lv, H Chen, F Jiao, W Xu, S Mu, H Wen, ...
Molecular cell 56 (2), 298-310, 2014
2252014
Transcriptome-wide discovery of microRNA binding sites in human brain
RL Boudreau, P Jiang, BL Gilmore, RM Spengler, R Tirabassi, JA Nelson, ...
Neuron 81 (2), 294-305, 2014
2142014
ASAP: the alternative splicing annotation project
C Lee, L Atanelov, B Modrek, Y Xing
Nucleic acids research 31 (1), 101-105, 2003
2142003
Transcriptome-wide analyses of CstF64–RNA interactions in global regulation of mRNA alternative polyadenylation
C Yao, J Biesinger, J Wan, L Weng, Y Xing, X Xie, Y Shi
Proceedings of the National Academy of Sciences 109 (46), 18773-18778, 2012
2102012
Global analysis of alternative splicing differences between humans and chimpanzees
JA Calarco, Y Xing, M Cáceres, JP Calarco, X Xiao, Q Pan, C Lee, ...
Genes & development 21 (22), 2963-2975, 2007
1992007
Rbfox proteins regulate splicing as part of a large multiprotein complex LASR
A Damianov, Y Ying, CH Lin, JA Lee, D Tran, AA Vashisht, ...
Cell 165 (3), 606-619, 2016
1812016
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