Nicola De Maio
Nicola De Maio
Scientist in Molecular Evolution, European Bioinformatic Institute (EMBL-EBI), Cambridge
Verified email at ebi.ac.uk - Homepage
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Year
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchęne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
7162019
PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals
R Kofler, P Orozco-terWengel, N De Maio, RV Pandey, V Nolte, A Futschik, ...
PloS one 6 (1), e15925, 2011
4342011
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
MBio 7 (2), e02162-15, 2016
1832016
New routes to phylogeography: a Bayesian structured coalescent approximation
N De Maio, CH Wu, KM O’Reilly, D Wilson
PLoS Genet 11 (8), e1005421, 2015
1452015
SCOTTI: efficient reconstruction of transmission within outbreaks with the structured coalescent
N De Maio, CH Wu, DJ Wilson
PLoS computational biology 12 (9), e1005130, 2016
752016
VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER
P Klepsatel, M Gáliková, N De Maio, CD Huber, C Schlötterer, T Flatt
Evolution 67 (12), 3573-3587, 2013
752013
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ...
Microbial genomics 5 (9), 2019
742019
Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models
N De Maio, C Schlötterer, C Kosiol
Molecular biology and evolution 30 (10), 2249-2262, 2013
612013
Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long-and short-read whole-genome sequencing demonstrate …
J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, ...
Journal of Antimicrobial Chemotherapy 72 (11), 3025-3034, 2017
582017
PoMo: an allele frequency-based approach for species tree estimation
N De Maio, D Schrempf, C Kosiol
Systematic biology 64 (6), 1018-1031, 2015
572015
Reproductive and post‐reproductive life history of wild‐caught Drosophila melanogaster under laboratory conditions
P Klepsatel, M Gáliková, N De Maio, S Ricci, C Schlötterer, T Flatt
Journal of Evolutionary Biology 26 (7), 1508-1520, 2013
572013
Issues with SARS-CoV-2 sequencing data
N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman
502020
Reversible polymorphism-aware phylogenetic models and their application to tree inference
D Schrempf, BQ Minh, N De Maio, A von Haeseler, C Kosiol
Journal of theoretical biology 407, 362-370, 2016
492016
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, ...
Molecular biology and evolution 34 (10), 2537-2554, 2017
432017
Modernizing Medical Microbiology Informatics Group (MMMIG). 2016
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
Evolutionary history of the global emergence of the Escherichia coli …, 0
43
Bayesian reconstruction of transmission within outbreaks using genomic variants
N De Maio, CJ Worby, DJ Wilson, N Stoesser
PLoS computational biology 14 (4), e1006117, 2018
412018
Two Distinct Patterns of Clostridium difficile Diversity Across Europe Indicating Contrasting Routes of Spread
DW Eyre, KA Davies, G Davis, WN Fawley, KE Dingle, N De Maio, ...
Clinical Infectious Diseases 67 (7), 1035-1044, 2018
362018
Stability of SARS-CoV-2 phylogenies
Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ...
PLoS genetics 16 (11), e1009175, 2020
332020
A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages
S Dellicour, K Durkin, SL Hong, B Vanmechelen, J Martí-Carreras, MS Gill, ...
Molecular biology and evolution 38 (4), 1608-1613, 2021
272021
Estimating empirical codon hidden Markov models
N De Maio, I Holmes, C Schlötterer, C Kosiol
Molecular biology and evolution 30 (3), 725-736, 2013
252013
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