| Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula A Branca, TD Paape, P Zhou, R Briskine, AD Farmer, J Mudge, AK Bharti, ... Proceedings of the National Academy of Sciences 108 (42), E864-E870, 2011 | 271 | 2011 |
| Epigenetic and genetic influences on DNA methylation variation in maize populations SR Eichten, R Briskine, J Song, Q Li, R Swanson-Wagner, PJ Hermanson, ... The Plant Cell 25 (8), 2783-2797, 2013 | 243 | 2013 |
| Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula J Stanton-Geddes, T Paape, B Epstein, R Briskine, J Yoder, J Mudge, ... PLoS ONE 8 (5), e65688, 2013 | 187 | 2013 |
| Genomic signature of adaptation to climate in Medicago truncatula JB Yoder, J Stanton-Geddes, P Zhou, R Briskine, ND Young, P Tiffin Genetics 196 (4), 1263-1275, 2014 | 180 | 2014 |
| Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays RS Sekhon, R Briskine, CN Hirsch, CL Myers, NM Springer, CR Buell, ... PloS one 8 (4), e61005, 2013 | 178 | 2013 |
| Reshaping of the maize transcriptome by domestication R Swanson-Wagner, R Briskine, R Schaefer, MB Hufford, J Ross-Ibarra, ... Proceedings of the National Academy of Sciences 109 (29), 11878-11883, 2012 | 164 | 2012 |
| Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology RV Briskine, T Paape, R ShimizuInatsugi, T Nishiyama, S Akama, J Sese, ... Molecular Ecology Resources, 2016 | 115 | 2016 |
| Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27 I Makarevitch, SR Eichten, R Briskine, AJ Waters, ON Danilevskaya, ... The Plant Cell 25 (3), 780-793, 2013 | 101 | 2013 |
| The Cardamine hirsuta genome offers insight into the evolution of morphological diversity X Gan, A Hay, M Kwantes, G Haberer, A Hallab, RD Ioio, H Hofhuis, ... Nature Plants 2, 16167, 2016 | 99 | 2016 |
| Highdensity genomewide association mapping implicates an Fbox encoding gene in Medicago truncatula resistance to Aphanomyces euteiches M Bonhomme, O André, Y Badis, J Ronfort, C Burgarella, N Chantret, ... New Phytologist 201 (4), 1328-1342, 2014 | 93 | 2014 |
| Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae B Epstein, A Branca, J Mudge, AK Bharti, R Briskine, AD Farmer, ... PLoS Genet 8 (8), e1002868-e1002868, 2012 | 91 | 2012 |
| Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome T Paape, P Zhou, A Branca, R Briskine, N Young, P Tiffin Genome biology and evolution 4 (5), 726-737, 2012 | 81 | 2012 |
| Phylogenetic signal variation in the genomes of Medicago (Fabaceae) JB Yoder, R Briskine, J Mudge, A Farmer, T Paape, K Steele, GD Weiblen, ... Systematic biology 62 (3), 424-438, 2013 | 69 | 2013 |
| Selection, genomewide fitness effects and evolutionary rates in the model legume Medicago truncatula T Paape, T Bataillon, P Zhou, T JY Kono, R Briskine, ND Young, P Tiffin Molecular ecology 22 (13), 3525-3538, 2013 | 56 | 2013 |
| Estimating heritability using genomic data J StantonGeddes, JB Yoder, R Briskine, ND Young, P Tiffin Methods in Ecology and Evolution 4 (12), 1151-1158, 2013 | 49 | 2013 |
| Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica T Paape, RV Briskine, G Halstead-Nussloch, HEL Lischer, ... Nature communications 9 (1), 3909, 2018 | 48 | 2018 |
| Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias L Li, R Briskine, R Schaefer, PS Schnable, CL Myers, LE Flagel, ... BMC Genomics 17 (1), 875, 2016 | 41 | 2016 |
| Discovering functional modules across diverse maize transcriptomes using COB, the co-expression browser RJ Schaefer, R Briskine, NM Springer, CL Myers PLoS ONE 9 (6), e99193, 2014 | 31 | 2014 |
| Finescale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species R Akiyama, J Sun, M Hatakeyama, HEL Lischer, RV Briskine, A Hay, ... New Phytologist 229 (6), 3587-3601, 2021 | 18 | 2021 |
| Positional bias in variant calls against draft reference assemblies RV Briskine, KK Shimizu BMC Genomics 18 (1), 263, 2017 | 9 | 2017 |
