| Diversity and complexity in DNA recognition by transcription factors G Badis, MF Berger, AA Philippakis, S Talukder, AR Gehrke, SA Jaeger, ... Science 324 (5935), 1720, 2009 | 1136 | 2009 |
| Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences MF Berger, G Badis, AR Gehrke, S Talukder, AA Philippakis, ... Cell 133 (7), 1266-1276, 2008 | 706 | 2008 |
| High-resolution DNA-binding specificity analysis of yeast transcription factors C Zhu, KJRP Byers, RP McCord, Z Shi, MF Berger, DE Newburger, ... Genome research 19 (4), 556-566, 2009 | 489 | 2009 |
| UniPROBE: an online database of protein binding microarray data on protein–DNA interactions DE Newburger, ML Bulyk Nucleic acids research 37 (suppl_1), D77-D82, 2009 | 455 | 2009 |
| A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors CA Grove, F De Masi, MI Barrasa, DE Newburger, MJ Alkema, ML Bulyk, ... Cell 138 (2), 314-327, 2009 | 304 | 2009 |
| Heterogeneity of nemaline myopathy cases with skeletal muscle αactin gene mutations PB Agrawal, CD Strickland, C Midgett, A Morales, DE Newburger, ... Annals of neurology 56 (1), 86-96, 2004 | 152 | 2004 |
| Genome evolution during progression to breast cancer DE Newburger, D Kashef-Haghighi, Z Weng, R Salari, RT Sweeney, ... Genome research 23 (7), 1097-1108, 2013 | 116 | 2013 |
| Read clouds uncover variation in complex regions of the human genome A Bishara, Y Liu, Z Weng, D Kashef-Haghighi, DE Newburger, R West, ... Genome research 25 (10), 1570-1580, 2015 | 78 | 2015 |
| The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci JS Rozowsky, D Newburger, F Sayward, J Wu, G Jordan, JO Korbel, ... Genome research 17 (6), 732-745, 2007 | 32 | 2007 |
| Inference of tumor phylogenies with improved somatic mutation discovery R Salari, SS Saleh, D Kashef-Haghighi, D Khavari, DE Newburger, ... Journal of Computational Biology 20 (11), 933-944, 2013 | 26 | 2013 |
| A flexible approach for highly multiplexed candidate gene targeted resequencing G Natsoulis, JM Bell, H Xu, JD Buenrostro, H Ordonez, S Grimes, ... PloS one 6 (6), e21088, 2011 | 25 | 2011 |
| Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia Z Weng, N Spies, SX Zhu, DE Newburger, D Kashef-Haghighi, ... Genome medicine 7, 1-10, 2015 | 21 | 2015 |
| A cross-sample statistical model for SNP detection in short-read sequencing data O Muralidharan, G Natsoulis, J Bell, D Newburger, H Xu, I Kela, H Ji, ... Nucleic acids research 40 (1), e5-e5, 2012 | 13 | 2012 |
| The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome DE Newburger, G Natsoulis, S Grimes, JM Bell, RW Davis, S Batzoglou, ... Nucleic acids research 40 (D1), D1137-D1143, 2012 | 8 | 2012 |
| Read Clouds Uncover Variation in Complex Regions of the Human Genome DE Newburger, R West, A Sidow, S Batzoglou Research in Computational Molecular Biology: 19th Annual International …, 2015 | | 2015 |
| Analysis of Genomic Variants for Investigating the Genetic Etiology of Disease DE Newburger Stanford University, 2015 | | 2015 |
| Abstract PD05-09: Whole-genome progression of breast cancer from early neoplasia to invasive carcinoma RB West, D Kashef-Haghighi, D Newburger, Z Weng, A Brunner, R Salari, ... Cancer Research 72 (24_Supplement), PD05-09-PD05-09, 2012 | | 2012 |
| Supplementary Methods for “High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors” C Zhu, K Byers, R McCord, Z Shi, M Berger, D Newburger, K Saulrieta, ... | | |
