| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 83 | 2021 |
| Molecular dynamics simulations reveal the balance of forces governing the formation of a guanine tetrad—a common structural unit of G-quadruplex DNA M Kogut, C Kleist, J Czub Nucleic acids research 44 (7), 3020-3030, 2016 | 36 | 2016 |
| Why do G-quadruplexes dimerize through the 5’-ends? Driving forces for G4 DNA dimerization examined in atomic detail M Kogut, C Kleist, J Czub PLoS computational biology 15 (9), e1007383, 2019 | 31 | 2019 |
| Effect of osmolytes on the thermal stability of proteins: replica exchange simulations of Trp-cage in urea and betaine solutions B Adamczak, M Kogut, J Czub Physical Chemistry Chemical Physics 20 (16), 11174-11182, 2018 | 25 | 2018 |
| Molecular basis of the osmolyte effect on protein stability: a lesson from the mechanical unfolding of lysozyme B Adamczak, M Wieczór, M Kogut, J Stangret, J Czub Biochemical Journal 473 (20), 3705-3724, 2016 | 24 | 2016 |
| Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment A Antoniak, I Biskupek, KK Bojarski, C Czaplewski, A Giełdoń, M Kogut, ... Journal of Molecular Graphics and Modelling 108, 108008, 2021 | 18 | 2021 |
| Mechanism of recognition of parallel G-quadruplexes by DEAH/RHAU helicase DHX36 explored by molecular dynamics simulations KA Hossain, M Jurkowski, J Czub, M Kogut Computational and Structural Biotechnology Journal 19, 2526-2536, 2021 | 12 | 2021 |
| Effect of osmolytes of different type on DNA behavior in aqueous solution. Experimental and theoretical studies PW Rakowska, M Kogut, J Czub, J Stangret Journal of Molecular Liquids 271, 186-201, 2018 | 9 | 2018 |
| The product of matrix metalloproteinase cleavage of doxorubicin conjugate for anticancer drug delivery: Calorimetric, spectroscopic, and molecular dynamics studies on peptide … K Butowska, K Żamojć, M Kogut, W Kozak, D Wyrzykowski, W Wiczk, ... International Journal of Molecular Sciences 21 (18), 6923, 2020 | 8 | 2020 |
| Extension of the Unres package for physics-based coarse-grained simulations of proteins and protein complexes to very large systems AK Sieradzan, CR Czaplewski, EA Lubecka, AG Lipska, AS Karczynska, ... Biophysical Journal 120 (3), 83a-84a, 2021 | 5 | 2021 |
| How acidic amino acid residues facilitate DNA target site selection KA Hossain, M Kogut, J Słabońska, S Sappati, M Wieczór, J Czub Proceedings of the National Academy of Sciences 120 (3), e2212501120, 2023 | 4 | 2023 |
| Pseudopotentials for coarse‐grained cross‐link‐assisted modeling of protein structures M Kogut, Z Gong, C Tang, A Liwo Journal of Computational Chemistry 42 (29), 2054-2067, 2021 | 4 | 2021 |
| Triplet–Triplet Annihilation Upconverting Liposomes: Mechanistic Insights into the Role of Membranes in Two-Dimensional TTA-UC A Prabhakaran, KK Jha, RCE Sia, RA Arellano Reyes, NK Sarangi, ... ACS Applied Materials & Interfaces, 2024 | | 2024 |
| Why Are Left-Handed G-Quadruplexes Scarce? M Jurkowski, M Kogut, S Sappati, J Czub The Journal of Physical Chemistry Letters 15 (11), 3142-3148, 2024 | | 2024 |
| Stability differences between right-and left-handed G-quadruplexes—explained by molecular dynamics simulations M Jurkowski, M Kogut, J Czub Biophysical Journal 123 (3), 80a, 2024 | | 2024 |
| Modeling structures of proteins with the coarse-grained UNRES force field in the CASP14 experiment A Antoniak, P Wesołowski, A Sieradzan, C Czaplewski, E Lubecka, ... Laboratory of Molecular Modeling, 2021 | | 2021 |
| Modeling oligomeric protein structures with the coarse-grained UNRES force field in the CASP14 experiment P Wesołowski, A Antoniak, I Biskupek, K Bojarski, C Czaplewski, ... Intercollegiate Faculty of Biotechnology UG, 2021 | | 2021 |
| Protein structure prediction in CASP14 with the coarse-grained UNRES model A Antoniak, I Biskupek, K Bojarski, C Czaplewski, A Giełdoń, M Kogut, ... Laboratory of Molecular Modeling, 2020 | | 2020 |
| Template-assisted prediction of protein structures with the coarse-grained UNRES force field and replica-exchange molecular dynamics P Wesołowski, A Antoniak, M Kogut, M Maszota-Zieleniak, K Bojarski, ... Intercollegiate Faculty of Biotechnology UG, 2020 | | 2020 |
| Termodynamika oddziaływań i przejść strukturalnych DNA w układach wodnych na podstawie symulacji metodą dynamiki molekularnej M Kogut | | 2019 |
Janusz StangretProfessor of Chemistry, Gdańsk University of TechnologyVerified email at pg.edu.pl
