Max A. Alekseyev

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Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
Alexander SirotkinNational Research University Higher School of EconomicsVerified email at hse.ru
Dmitry AntipovVisiting fellow, National Institutes of HealthVerified email at spbu.ru
Alexey GurevichJun. Prof. of Bioinformatics, Helmholtz Inst. for Pharm. Res. Saarland (HIPS) & Saarland UniversityVerified email at helmholtz-hips.de
Andrey PrjibelskiPostdoctoral Researcher @ University of HelsinkiVerified email at helsinki.fi
Sergey NurkSenior Applications Bioinformatician, Oxford Nanopore TechnologiesVerified email at nanoporetech.com
Anton BankevichPSUVerified email at psu.edu
Sergey NikolenkoSteklov Institute of Mathematics at St. Petersburg, RussiaVerified email at logic.pdmi.ras.ru
Son PhamBioTuringVerified email at bioturing.com
Alexander S. KulikovSteklov Institute of Mathematics at St. PetersburgVerified email at logic.pdmi.ras.ru
Mikhail DvorkinSt. Petersburg Academic UniversityVerified email at rain.ifmo.ru
Nikolay Vyahhi-Verified email at bioinf.spbau.ru
Anton KorobeynikovSaint Petersburg State UniversityVerified email at spbu.ru
Jeffrey S. McLeanAssociate Professor University of WashingtonVerified email at uw.edu
Alla LapidusSt. Petersburg State University; Санкт Петербургский государственный университетVerified email at spbu.ru
Ramunas StepanauskasBigelow Laboratory for Ocean SciencesVerified email at bigelow.org
Sergey AganezovGenomic Applications at Oxford Nanopore Technologies, IncVerified email at nanoporetech.com
Nikita AlexeevITMO UniversityVerified email at corp.ifmo.ru
Pavel AvdeyevPostdoctoral Fellow, UT Southwestern Medical CenterVerified email at UTsouthwestern.edu
Steffen HeberNorth Carolina State UniversityVerified email at ncsu.edu

Max A. Alekseyev

George Washington University

Verified email at gwu.edu - Homepage

Bioinformatics Comparative Genomics Graph Theory Combinatorics Number Theory


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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012	18278	2012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013	1053	2013
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Lecture Notes in Computer Science 7821, 158-170, 2013	725*	2013
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015	539	2015
BayesHammer: Bayesian clustering for error correction in single-cell sequencing SI Nikolenko, AI Korobeynikov, MA Alekseyev BMC Genomics 14 (Suppl 1), S7, 2013	450	2013
Splicing graphs and EST assembly problem S Heber, M Alekseyev, SH Sze, H Tang, PA Pevzner Bioinformatics 18 (Suppl 1), 181-188, 2002	269	2002
Breakpoint graphs and ancestral genome reconstructions M Alekseyev, PA Pevzner Genome research 19 (5), 943-957, 2009	162	2009
Multi-break rearrangements and chromosomal evolution MA Alekseyev, PA Pevzner Theoretical Computer Science 395 (2-3), 193-202, 2008	72	2008
Colored de Bruijn graphs and the genome halving problem MA Alekseyev, PA Pevzner IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (1), 98-107, 2007	68	2007
Reconstruction of ancestral genomes in presence of gene gain and loss P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev Journal of Computational Biology 23 (3), 150-164, 2016	66	2016
Are there rearrangement hotspots in the human genome? MA Alekseyev, PA Pevzner PLoS Computational Biology 3 (11), e209, 2007	51	2007
On approximation of groups, group actions, and Hopf algebras MA Alekseev, LY Glebskii, EI Gordon Journal of Mathematical Sciences 107, 4305-4332, 2001	40	2001
Multi-break rearrangements and breakpoint re-uses: from circular to linear genomes MA Alekseyev Journal of Computational Biology 15 (8), 1117-1131, 2008	36	2008
Whole genome duplications, multi-break rearrangements, and genome halving problem MA Alekseyev, PA Pevzner Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete …, 2007	33	2007
Phylogenetic analysis of genome rearrangements among five mammalian orders H Luo, W Arndt, Y Zhang, G Shi, MA Alekseyev, J Tang, AL Hughes, ... Molecular phylogenetics and evolution 65 (3), 871-882, 2012	27	2012
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies RM Waterhouse, S Aganezov, Y Anselmetti, J Lee, L Ruzzante, ... BMC biology 18, 1-20, 2020	26	2020
Comparative genomics reveals birth and death of fragile regions in mammalian evolution MA Alekseyev, PA Pevzner Genome Biology 11 (11), 1-15, 2010	26	2010
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly S Pham, D Antipov, A Sirotkin, G Tesler, P Pevzner, M Alekseyev Journal of Computational Biology 20 (4), 359-371, 2013	25	2013
Whole genome duplications and contracted breakpoint graphs MA Alekseyev, PA Pevzner SIAM Journal on Computing 36 (6), 1748, 2007	24	2007
Scaffold assembly based on genome rearrangement analysis S Aganezov, N Sitdykova, AGC Consortium, MA Alekseyev Computational biology and chemistry 57, 46-53, 2015	19	2015

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