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Matt Rardin
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SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks
MJ Rardin, W He, Y Nishida, JC Newman, C Carrico, SR Danielson, ...
Cell metabolism 18 (6), 920-933, 2013
6302013
Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation
B Schilling, MJ Rardin, BX MacLean, AM Zawadzka, BE Frewen, ...
Molecular & Cellular Proteomics 11 (5), 202-214, 2012
4922012
Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways
MJ Rardin, JC Newman, JM Held, MP Cusack, DJ Sorensen, B Li, ...
Proceedings of the National Academy of Sciences 110 (16), 6601-6606, 2013
4762013
SIRT5 regulates both cytosolic and mitochondrial protein malonylation with glycolysis as a major target
Y Nishida, MJ Rardin, C Carrico, W He, AK Sahu, P Gut, R Najjar, M Fitch, ...
Molecular cell 59 (2), 321-332, 2015
4172015
Sirt3 regulates metabolic flexibility of skeletal muscle through reversible enzymatic deacetylation
E Jing, BT O’Neill, MJ Rardin, A Kleinridders, OR Ilkeyeva, S Ussar, ...
Diabetes 62 (10), 3404-3417, 2013
2722013
Adipose-specific deletion of TFAM increases mitochondrial oxidation and protects mice against obesity and insulin resistance
C Vernochet, A Mourier, O Bezy, Y Macotela, J Boucher, MJ Rardin, D An, ...
Cell metabolism 16 (6), 765-776, 2012
2582012
Sirtuin 3 (SIRT3) protein regulates long-chain acyl-CoA dehydrogenase by deacetylating conserved lysines near the active site
SS Bharathi, Y Zhang, AW Mohsen, R Uppala, M Balasubramani, ...
Journal of Biological Chemistry 288 (47), 33837-33847, 2013
1832013
Monitoring phosphorylation of the pyruvate dehydrogenase complex
MJ Rardin, SE Wiley, RK Naviaux, AN Murphy, JE Dixon
Analytical biochemistry 389 (2), 157-164, 2009
1792009
The type III effector EspF coordinates membrane trafficking by the spatiotemporal activation of two eukaryotic signaling pathways
NM Alto, AW Weflen, MJ Rardin, D Yarar, CS Lazar, R Tonikian, A Koller, ...
The Journal of cell biology 178 (7), 1265-1278, 2007
1522007
SIRT3 and SIRT5 regulate the enzyme activity and cardiolipin binding of very long-chain acyl-CoA dehydrogenase
Y Zhang, SS Bharathi, MJ Rardin, R Uppala, E Verdin, BW Gibson, ...
PloS one 10 (3), e0122297, 2015
1072015
Multiplexed, scheduled, high-resolution parallel reaction monitoring on a full scan QqTOF instrument with integrated data-dependent and targeted mass spectrometric workflows
B Schilling, B MacLean, JM Held, AK Sahu, MJ Rardin, DJ Sorensen, ...
Analytical chemistry 87 (20), 10222-10229, 2015
1062015
Lysine desuccinylase SIRT5 binds to cardiolipin and regulates the electron transport chain
Y Zhang, SS Bharathi, MJ Rardin, J Lu, KV Maringer, S Sims-Lucas, ...
Journal of Biological Chemistry 292 (24), 10239-10249, 2017
1032017
Quantification of lysine acetylation and succinylation stoichiometry in proteins using mass spectrometric data-independent acquisitions (SWATH)
JG Meyer, AK D’Souza, DJ Sorensen, MJ Rardin, AJ Wolfe, BW Gibson, ...
Journal of the American Society for Mass Spectrometry 27 (11), 1758-1771, 2016
792016
MS1 peptide ion intensity chromatograms in MS2 (SWATH) data independent acquisitions. Improving post acquisition analysis of proteomic experiments*[S]
MJ Rardin, B Schilling, LY Cheng, BX MacLean, DJ Sorensen, AK Sahu, ...
Molecular & Cellular Proteomics 14 (9), 2405-2419, 2015
662015
Temporal dynamics of liver mitochondrial protein acetylation and succinylation and metabolites due to high fat diet and/or excess glucose or fructose
JG Meyer, S Softic, N Basisty, MJ Rardin, E Verdin, BW Gibson, ...
PloS one 13 (12), e0208973, 2018
442018
Characterization of a novel FLT3 BiTE molecule for the treatment of acute myeloid leukemia
B Brauchle, RL Goldstein, CM Karbowski, A Henn, CM Li, VL Bücklein, ...
Molecular Cancer Therapeutics 19 (9), 1875-1888, 2020
422020
SUCLA2 mutations cause global protein succinylation contributing to the pathomechanism of a hereditary mitochondrial disease
P Gut, S Matilainen, JG Meyer, P Pällijeff, J Richard, CJ Carroll, L Euro, ...
Nature communications 11 (1), 5927, 2020
392020
Rapid assessment of contaminants and interferences in mass spectrometry data using skyline
MJ Rardin
Journal of The American Society for Mass Spectrometry 29 (6), 1327-1330, 2018
332018
Tor1 regulates protein solubility in Saccharomyces cerevisiae
TW Peters, MJ Rardin, G Czerwieniec, US Evani, P Reis-Rodrigues, ...
Molecular biology of the cell 23 (24), 4679-4688, 2012
332012
Dual specificity phosphatases 18 and 21 target to opposing sides of the mitochondrial inner membrane
MJ Rardin, SE Wiley, AN Murphy, DJ Pagliarini, JE Dixon
Journal of biological chemistry 283 (22), 15440-15450, 2008
252008
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